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authorGeorge Hartzell <hartzell@alerce.com>2017-07-15 09:05:51 -0700
committerMassimiliano Culpo <massimiliano.culpo@googlemail.com>2017-07-15 18:05:51 +0200
commit8bd22c3294b0157782139dc8a53859ba93923fed (patch)
tree26111e4e442c85c198ee36dc51c00715ed2a9c57 /var
parent246c07f864d2db571f7e3ab55e875a4e75b93281 (diff)
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Add package for Somatic Sniper (#4778)
Lightly tested on CentOS 7.
Diffstat (limited to 'var')
-rw-r--r--var/spack/repos/builtin/packages/somatic-sniper/package.py36
1 files changed, 36 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/somatic-sniper/package.py b/var/spack/repos/builtin/packages/somatic-sniper/package.py
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+++ b/var/spack/repos/builtin/packages/somatic-sniper/package.py
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+##############################################################################
+# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/llnl/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class SomaticSniper(CMakePackage):
+ """A tool to call somatic single nucleotide variants."""
+
+ homepage = "http://gmt.genome.wustl.edu/packages/somatic-sniper"
+ url = "https://github.com/genome/somatic-sniper/archive/v1.0.5.0.tar.gz"
+
+ version('1.0.5.0', '64bc2b001c9a8089f2a05900f8a0abfe')
+
+ parallel = False