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| author | lingnanyuan <1297162327@qq.com> | 2017-11-08 14:57:15 -0600 |
|---|---|---|
| committer | Christoph Junghans <christoph.junghans@gmail.com> | 2017-11-08 13:57:15 -0700 |
| commit | 241e1b56b5e4c0833ffb0d46de618a20ece7b2b7 (patch) | |
| tree | c62ce7e450003241d47288249a61d1c3cd3b101d /var | |
| parent | 92a582d5f867fac694237dae2160690b1f3b2789 (diff) | |
| download | spack-241e1b56b5e4c0833ffb0d46de618a20ece7b2b7.tar.gz spack-241e1b56b5e4c0833ffb0d46de618a20ece7b2b7.tar.bz2 spack-241e1b56b5e4c0833ffb0d46de618a20ece7b2b7.tar.xz spack-241e1b56b5e4c0833ffb0d46de618a20ece7b2b7.zip | |
r-dnacopy: Create new package. (#6183)
Diffstat (limited to 'var')
| -rw-r--r-- | var/spack/repos/builtin/packages/r-dnacopy/package.py | 36 |
1 files changed, 36 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/r-dnacopy/package.py b/var/spack/repos/builtin/packages/r-dnacopy/package.py new file mode 100644 index 0000000000..ade0424829 --- /dev/null +++ b/var/spack/repos/builtin/packages/r-dnacopy/package.py @@ -0,0 +1,36 @@ +############################################################################## +# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/spack/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class RDnacopy(RPackage): + """Implements the circular binary segmentation (CBS) algorithm + to segment DNA copy number data and identify genomic regions + with abnormal copy number.""" + + homepage = "https://www.bioconductor.org/packages/DNAcopy/" + url = "https://git.bioconductor.org/packages/DNAcopy" + + version('1.50.1', git='https://git.bioconductor.org/packages/DNAcopy', commit='a20153029e28c009df813dbaf13d9f519fafa4e8') |