new package: Seqan (bioinformatics) (#7588)

* new package: Seqan (bioinformatics)

* add compiler requirements as conflicts

* fix typo

* add dependency types

* correct checksum

1 files changed, 52 insertions, 0 deletions

diff --git a/var/spack/repos/builtin/packages/seqan/package.py b/var/spack/repos/builtin/packages/seqan/package.py
new file mode 100644
index 0000000000..cbdba07504
--- /dev/null
+++ b/var/spack/repos/builtin/packages/seqan/package.py
@@ -0,0 +1,52 @@
+##############################################################################
+# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/spack/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+
+from spack import *
+
+
+class Seqan(CMakePackage):
+    """SeqAn is an open source C++ library of efficient algorithms and data
+    structures for the analysis of sequences with the focus on biological data.
+    Our library applies a unique generic design that guarantees high
+    performance, generality, extensibility, and integration with other
+    libraries. SeqAn is easy to use and simplifies the development of new
+    software tools with a minimal loss of performance"""
+
+    homepage = "https://www.seqan.de"
+    url      = "https://github.com/seqan/seqan/archive/seqan-v2.4.0.tar.gz"
+
+    version('2.4.0', 'd899821e295fed0a22e08099f40cbc17')
+
+    depends_on('cmake@3.4.0:', type='build')
+    depends_on('python@2.7.0:', type='build')
+    depends_on('py-nose', type='build')
+    depends_on('py-sphinx', type='build')
+    depends_on('boost', type=('build', 'link'))
+    depends_on('zlib', type=('build', 'link'))
+    depends_on('bzip2', type=('build', 'link'))
+
+    conflicts('%intel@:16.0.4')
+    conflicts('%gcc@:4.9.4')
+    conflicts('%llvm@:3.5.1')