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| author | David Orman <orman@iastate.edu> | 2018-03-31 10:24:16 -0500 |
|---|---|---|
| committer | Adam J. Stewart <ajstewart426@gmail.com> | 2018-03-31 10:24:16 -0500 |
| commit | c032b2d9dbe31077f29762f81da0357710c447bd (patch) | |
| tree | 71ba44499d3023da74e92d3e7452f27b33b39237 /var | |
| parent | 42c14e0fdbfe6ed477925ad21de77ac15ae9fdcf (diff) | |
| download | spack-c032b2d9dbe31077f29762f81da0357710c447bd.tar.gz spack-c032b2d9dbe31077f29762f81da0357710c447bd.tar.bz2 spack-c032b2d9dbe31077f29762f81da0357710c447bd.tar.xz spack-c032b2d9dbe31077f29762f81da0357710c447bd.zip | |
Features/py breakseq2 (#7642)
* added htslib 1.7 and checksum
* py-breakseq2: new package!!!!
* py-breakseq2: fixed whitespace
* py-breakseq2: added additional dependencies
* py-breakseq2: fixed build/run depends
* py-breakseq2: added additonal dependencies
Diffstat (limited to 'var')
| -rw-r--r-- | var/spack/repos/builtin/packages/py-breakseq2/package.py | 41 |
1 files changed, 41 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/py-breakseq2/package.py b/var/spack/repos/builtin/packages/py-breakseq2/package.py new file mode 100644 index 0000000000..2c5a5fb693 --- /dev/null +++ b/var/spack/repos/builtin/packages/py-breakseq2/package.py @@ -0,0 +1,41 @@ +############################################################################## +# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/spack/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class PyBreakseq2(PythonPackage): + """nucleotide-resolution analysis of structural variants""" + + homepage = "http://bioinform.github.io/breakseq2/" + url = "https://github.com/bioinform/breakseq2/archive/2.2.tar.gz" + + version('2.2', '6fd5a103c2781717b0b1d0efcbdc17e7') + + depends_on('py-setuptools', type='build') + depends_on('py-biopython@1.65', type=('build', 'run')) + depends_on('py-cython', type='build') + depends_on('py-pysam@0.7.7', type=('build', 'run')) + depends_on('bwa', type='run') + depends_on('samtools', type='run') |