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authorSimon Flood <simonflood@users.noreply.github.com>2018-04-11 20:22:23 +0100
committerAdam J. Stewart <ajstewart426@gmail.com>2018-04-11 14:22:23 -0500
commited5f68211e93df983a5e15c7f1ce812b810b49c0 (patch)
treeab8ecb70aa2c7a7fffe6c3f087809f55d33f90c4 /var
parenta23e319daccf1b1689aa43fb1b92c12ee5d475a6 (diff)
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Add ANTs package (#7717)
* Add ants package Add a package for ANTs (version 2.2.0) * Update package.py * Update package.py * Update package.py * Update package.py * Update package.py
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diff --git a/var/spack/repos/builtin/packages/ants/package.py b/var/spack/repos/builtin/packages/ants/package.py
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+##############################################################################
+# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/llnl/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class Ants(CMakePackage):
+ """ANTs extracts information from complex datasets that include imaging.
+ Paired with ANTsR (answer), ANTs is useful for managing, interpreting
+ and visualizing multidimensional data. ANTs is popularly considered a
+ state-of-the-art medical image registration and segmentation toolkit.
+ ANTs depends on the Insight ToolKit (ITK), a widely used medical image
+ processing library to which ANTs developers contribute.
+ """
+
+ homepage = "http://stnava.github.io/ANTs/"
+ url = "https://github.com/ANTsX/ANTs/archive/v2.2.0.tar.gz"
+
+ version('2.2.0', '5661b949268100ac0f7baf6d2702b4dd')
+
+ def install(self, spec, prefix):
+ with working_dir(join_path('spack-build', 'ANTS-build'), create=False):
+ make("install")
+ install_tree('Scripts', prefix.bin)
+
+ def setup_environment(self, spack_env, run_env):
+ run_env.set('ANTSPATH', self.prefix.bin)