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author | Kevin Brandstatter <kjbrandstatter@gmail.com> | 2015-02-26 14:42:12 -0600 |
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committer | Kevin Brandstatter <kjbrandstatter@gmail.com> | 2015-02-26 14:42:12 -0600 |
commit | 2f2eab0e157b7ebced80772d9bc81b205d69d620 (patch) | |
tree | 2e7fc63859631b84f68aeeb14d8414a5ecb01f9c /var | |
parent | bbfc519ee5631efa4224d852d9c63446a60a8c07 (diff) | |
parent | ffdb90f39a56e5f0dacefd19ccf85ddd0e7a01c0 (diff) | |
download | spack-2f2eab0e157b7ebced80772d9bc81b205d69d620.tar.gz spack-2f2eab0e157b7ebced80772d9bc81b205d69d620.tar.bz2 spack-2f2eab0e157b7ebced80772d9bc81b205d69d620.tar.xz spack-2f2eab0e157b7ebced80772d9bc81b205d69d620.zip |
Merge branch 'develop' of github.com:kev40293/spack into develop
Diffstat (limited to 'var')
70 files changed, 1392 insertions, 39 deletions
diff --git a/var/spack/packages/ImageMagick/package.py b/var/spack/packages/ImageMagick/package.py index 657b9255a3..753ea80ca6 100644 --- a/var/spack/packages/ImageMagick/package.py +++ b/var/spack/packages/ImageMagick/package.py @@ -3,18 +3,32 @@ from spack import * class Imagemagick(Package): """ImageMagick is a image processing library""" homepage = "http://www.imagemagic.org" - url = "http://www.imagemagick.org/download/ImageMagick-6.8.9-10.tar.gz" - version('6.9.0-0', '2cf094cb86ec518fa5bc669ce2d21613') - version('6.8.9-10', 'aa050bf9785e571c956c111377bbf57c') - version('6.8.9-9', 'e63fed3e3550851328352c708f800676') + #------------------------------------------------------------------------- + # ImageMagick does not keep around anything but *-10 versions, so + # this URL may change. If you want the bleeding edge, you can + # uncomment it and see if it works but you may need to try to + # fetch a newer version (-6, -7, -8, -9, etc.) or you can stick + # wtih the older, stable, archived -10 versions below. + # + # TODO: would be nice if spack had a way to recommend avoiding a + # TODO: bleeding edge version, but not comment it out. + # ------------------------------------------------------------------------- + # version('6.9.0-6', 'c1bce7396c22995b8bdb56b7797b4a1b', + # url="http://www.imagemagick.org/download/ImageMagick-6.9.0-6.tar.bz2") + + #------------------------------------------------------------------------- + # *-10 versions are archived, so these versions should fetch reliably. + # ------------------------------------------------------------------------- + version('6.8.9-10', 'aa050bf9785e571c956c111377bbf57c', + url="http://sourceforge.net/projects/imagemagick/files/old-sources/6.x/6.8/ImageMagick-6.8.9-10.tar.gz/download") depends_on('libtool') depends_on('jpeg') depends_on('libpng') depends_on('freetype') depends_on('fontconfig') -# depends_on('libtiff') + depends_on('libtiff') def install(self, spec, prefix): configure("--prefix=%s" % prefix) diff --git a/var/spack/packages/Mitos/package.py b/var/spack/packages/Mitos/package.py new file mode 100644 index 0000000000..272360a55c --- /dev/null +++ b/var/spack/packages/Mitos/package.py @@ -0,0 +1,18 @@ +from spack import * + +class Mitos(Package): + """Mitos is a library and a tool for collecting sampled memory + performance data to view with MemAxes""" + + homepage = "https://github.com/scalability-llnl/Mitos" + url = "https://github.com/scalability-llnl/Mitos" + + version('0.7', git='https://github.com/scalability-llnl/Mitos.git', tag='v0.7') + + depends_on('dyninst') + + def install(self, spec, prefix): + with working_dir('spack-build', create=True): + cmake('..', *std_cmake_args) + make() + make("install") diff --git a/var/spack/packages/R/package.py b/var/spack/packages/R/package.py new file mode 100644 index 0000000000..2e6f65a742 --- /dev/null +++ b/var/spack/packages/R/package.py @@ -0,0 +1,33 @@ +from spack import * + +class R(Package): + """R is 'GNU S', a freely available language and environment for + statistical computing and graphics which provides a wide va + riety of statistical and graphical techniques: linear and + nonlinear modelling, statistical tests, time series analysis, + classification, clustering, etc. Please consult the R project + homepage for further information.""" + homepage = "http://www.example.com" + url = "http://cran.cnr.berkeley.edu/src/base/R-3/R-3.1.2.tar.gz" + + version('3.1.2', '3af29ec06704cbd08d4ba8d69250ae74') + + depends_on("readline") + depends_on("ncurses") + depends_on("icu") + depends_on("glib") + depends_on("zlib") + depends_on("libtiff") + depends_on("jpeg") + depends_on("cairo") + depends_on("pango") + depends_on("freetype") + depends_on("tcl") + depends_on("tk") + + def install(self, spec, prefix): + configure("--prefix=%s" % prefix, + "--enable-R-shlib", + "--enable-BLAS-shlib") + make() + make("install") diff --git a/var/spack/packages/bison/package.py b/var/spack/packages/bison/package.py new file mode 100644 index 0000000000..7c526fb958 --- /dev/null +++ b/var/spack/packages/bison/package.py @@ -0,0 +1,17 @@ +from spack import * + +class Bison(Package): + """Bison is a general-purpose parser generator that converts + an annotated context-free grammar into a deterministic LR or + generalized LR (GLR) parser employing LALR(1) parser tables.""" + + homepage = "http://www.gnu.org/software/bison/" + url = "http://ftp.gnu.org/gnu/bison/bison-3.0.tar.gz" + + version('3.0.4', 'a586e11cd4aff49c3ff6d3b6a4c9ccf8') + + def install(self, spec, prefix): + configure("--prefix=%s" % prefix) + + make() + make("install") diff --git a/var/spack/packages/clang/package.py b/var/spack/packages/clang/package.py index b0097bd126..4f10385dbd 100644 --- a/var/spack/packages/clang/package.py +++ b/var/spack/packages/clang/package.py @@ -29,11 +29,10 @@ class Clang(Package): Objective C and Objective C++ front-end for the LLVM compiler. """ homepage = "http://clang.llvm.org" - url = "http://llvm.org/releases/3.4.2/cfe-3.4.2.src.tar.gz" + list_url = "http://llvm.org/releases/download.html" depends_on("llvm") - - version('3.4.2', '87945973b7c73038871c5f849a818588') + version('3.4.2', '87945973b7c73038871c5f849a818588', url='http://llvm.org/releases/3.4.2/cfe-3.4.2.src.tar.xz') def install(self, spec, prefix): env['CXXFLAGS'] = self.compiler.cxx11_flag diff --git a/var/spack/packages/dbus/package.py b/var/spack/packages/dbus/package.py index 5fee103f03..f7f394498c 100644 --- a/var/spack/packages/dbus/package.py +++ b/var/spack/packages/dbus/package.py @@ -23,3 +23,7 @@ class Dbus(Package): configure("--prefix=%s" % prefix) make() make("install") + + # dbus needs a machine id generated after install + dbus_uuidgen = Executable(join_path(prefix.bin, 'dbus-uuidgen')) + dbus_uuidgen('--ensure') diff --git a/var/spack/packages/dri2proto/package.py b/var/spack/packages/dri2proto/package.py new file mode 100644 index 0000000000..11dfa568e2 --- /dev/null +++ b/var/spack/packages/dri2proto/package.py @@ -0,0 +1,14 @@ +from spack import * + +class Dri2proto(Package): + """DRI2 Protocol Headers.""" + homepage = "http://http://cgit.freedesktop.org/xorg/proto/dri2proto/" + url = "http://xorg.freedesktop.org/releases/individual/proto/dri2proto-2.8.tar.gz" + + version('2.8', '19ea18f63d8ae8053c9fa84b60365b77') + + def install(self, spec, prefix): + configure("--prefix=%s" % prefix) + + make() + make("install") diff --git a/var/spack/packages/dyninst/package.py b/var/spack/packages/dyninst/package.py index 2e6f3e010a..f3d661f9a9 100644 --- a/var/spack/packages/dyninst/package.py +++ b/var/spack/packages/dyninst/package.py @@ -31,8 +31,9 @@ class Dyninst(Package): url = "http://www.dyninst.org/sites/default/files/downloads/dyninst/8.1.2/DyninstAPI-8.1.2.tgz" list_url = "http://www.dyninst.org/downloads/dyninst-8.x" - version('8.2.1', 'abf60b7faabe7a2e4b54395757be39c7', - url="http://www.paradyn.org/release8.2/DyninstAPI-8.2.1.tgz") +# Doesn't build right with boost@1.55.0 +# version('8.2.1', 'abf60b7faabe7a2e4b54395757be39c7', +# url="http://www.paradyn.org/release8.2/DyninstAPI-8.2.1.tgz") version('8.1.2', 'bf03b33375afa66fe0efa46ce3f4b17a', url="http://www.paradyn.org/release8.1.2/DyninstAPI-8.1.2.tgz") version('8.1.1', 'd1a04e995b7aa70960cd1d1fac8bd6ac', @@ -40,7 +41,7 @@ class Dyninst(Package): depends_on("libelf") depends_on("libdwarf") - depends_on("boost@1.42:1.43") + depends_on("boost@1.42:") # new version uses cmake def install(self, spec, prefix): diff --git a/var/spack/packages/flex/package.py b/var/spack/packages/flex/package.py new file mode 100644 index 0000000000..b065904912 --- /dev/null +++ b/var/spack/packages/flex/package.py @@ -0,0 +1,15 @@ +from spack import * + +class Flex(Package): + """Flex is a tool for generating scanners.""" + + homepage = "http://flex.sourceforge.net/" + url = "http://download.sourceforge.net/flex/flex-2.5.39.tar.gz" + + version('2.5.39', 'e133e9ead8ec0a58d81166b461244fde') + + def install(self, spec, prefix): + configure("--prefix=%s" % prefix) + + make() + make("install") diff --git a/var/spack/packages/geos/package.py b/var/spack/packages/geos/package.py new file mode 100644 index 0000000000..4a2657e32f --- /dev/null +++ b/var/spack/packages/geos/package.py @@ -0,0 +1,31 @@ +from spack import * + +class Geos(Package): + """GEOS (Geometry Engine - Open Source) is a C++ port of the Java + Topology Suite (JTS). As such, it aims to contain the complete + functionality of JTS in C++. This includes all the OpenGIS + Simple Features for SQL spatial predicate functions and spatial + operators, as well as specific JTS enhanced topology functions.""" + + homepage = "http://trac.osgeo.org/geos/" + url = "http://download.osgeo.org/geos/geos-3.4.2.tar.bz2" + + version('3.4.2', 'fc5df2d926eb7e67f988a43a92683bae') + version('3.4.1', '4c930dec44c45c49cd71f3e0931ded7e') + version('3.4.0', 'e41318fc76b5dc764a69d43ac6b18488') + version('3.3.9', '4794c20f07721d5011c93efc6ccb8e4e') + version('3.3.8', '75be476d0831a2d14958fed76ca266de') + version('3.3.7', '95ab996d22672b067d92c7dee2170460') + version('3.3.6', '6fadfb941541875f4976f75fb0bbc800') + version('3.3.5', '2ba61afb7fe2c5ddf642d82d7b16e75b') + version('3.3.4', '1bb9f14d57ef06ffa41cb1d67acb55a1') + version('3.3.3', '8454e653d7ecca475153cc88fd1daa26') + + extends('python') + depends_on('swig') + + def install(self, spec, prefix): + configure("--prefix=%s" % prefix, + "--enable-python") + make() + make("install") diff --git a/var/spack/packages/gperf/package.py b/var/spack/packages/gperf/package.py new file mode 100644 index 0000000000..32551b67b4 --- /dev/null +++ b/var/spack/packages/gperf/package.py @@ -0,0 +1,19 @@ +from spack import * + +class Gperf(Package): + """GNU gperf is a perfect hash function generator. For a given + list of strings, it produces a hash function and hash table, in + form of C or C++ code, for looking up a value depending on the + input string. The hash function is perfect, which means that the + hash table has no collisions, and the hash table lookup needs a + single string comparison only.""" + + homepage = "https://www.gnu.org/software/gperf/" + url = "http://ftp.gnu.org/pub/gnu/gperf/gperf-3.0.4.tar.gz" + + version('3.0.4', 'c1f1db32fb6598d6a93e6e88796a8632') + + def install(self, spec, prefix): + configure("--prefix=%s" % prefix) + make() + make("install") diff --git a/var/spack/packages/hdf5/package.py b/var/spack/packages/hdf5/package.py index 615c2a7fe4..992dd8ec70 100644 --- a/var/spack/packages/hdf5/package.py +++ b/var/spack/packages/hdf5/package.py @@ -18,12 +18,14 @@ class Hdf5(Package): # TODO: currently hard-coded to use OpenMPI def install(self, spec, prefix): + configure( "--prefix=%s" % prefix, "--with-zlib=%s" % spec['zlib'].prefix, "--enable-parallel", - "CC=%s" % spec['openmpi'].prefix.bin + "/mpicc", - "CXX=%s" % spec['openmpi'].prefix.bin + "/mpic++") + "--enable-shared", + "CC=%s" % spec['mpich'].prefix.bin + "/mpicc", + "CXX=%s" % spec['mpich'].prefix.bin + "/mpic++") make() make("install") diff --git a/var/spack/packages/icu4c/package.py b/var/spack/packages/icu4c/package.py new file mode 100644 index 0000000000..55b44463b2 --- /dev/null +++ b/var/spack/packages/icu4c/package.py @@ -0,0 +1,17 @@ +from spack import * + +class Icu4c(Package): + """ICU is a mature, widely used set of C/C++ and Java libraries + providing Unicode and Globalization support for software applications.""" + + homepage = "http://site.icu-project.org/" + url = "http://downloads.sourceforge.net/project/icu/ICU4C/54.1/icu4c-54_1-src.tgz" + + version('54_1', 'e844caed8f2ca24c088505b0d6271bc0') + + def install(self, spec, prefix): + cd("source") + configure("--prefix=%s" % prefix) + + make() + make("install") diff --git a/var/spack/packages/libdrm/package.py b/var/spack/packages/libdrm/package.py new file mode 100644 index 0000000000..00736b7811 --- /dev/null +++ b/var/spack/packages/libdrm/package.py @@ -0,0 +1,18 @@ +from spack import * + +class Libdrm(Package): + """A userspace library for accessing the DRM, direct + rendering manager, on Linux, BSD and other operating + systems that support the ioctl interface.""" + + homepage = "http://dri.freedesktop.org/libdrm/" # no real website... + url = "http://dri.freedesktop.org/libdrm/libdrm-2.4.59.tar.gz" + + version('2.4.59', '105ac7af1afcd742d402ca7b4eb168b6') + version('2.4.33', '86e4e3debe7087d5404461e0032231c8') + + def install(self, spec, prefix): + configure("--prefix=%s" % prefix) + + make() + make("install") diff --git a/var/spack/packages/libdwarf/package.py b/var/spack/packages/libdwarf/package.py index c4d71ebc01..099a974e93 100644 --- a/var/spack/packages/libdwarf/package.py +++ b/var/spack/packages/libdwarf/package.py @@ -53,13 +53,6 @@ class Libdwarf(Package): parallel = False - def clean(self): - for dir in dwarf_dirs: - with working_dir(dir): - if os.path.exists('Makefile'): - make('clean') - - def install(self, spec, prefix): # dwarf build does not set arguments for ar properly make.add_default_arg('ARFLAGS=rcs') diff --git a/var/spack/packages/libgcrypt/package.py b/var/spack/packages/libgcrypt/package.py new file mode 100644 index 0000000000..1d0a57f317 --- /dev/null +++ b/var/spack/packages/libgcrypt/package.py @@ -0,0 +1,19 @@ +from spack import * + +class Libgcrypt(Package): + """Libgcrypt is a general purpose cryptographic library based on + the code from GnuPG. It provides functions for all cryptographic + building blocks: symmetric ciphers, hash algorithms, MACs, public + key algorithms, large integer functions, random numbers and a lot + of supporting functions. """ + homepage = "http://www.gnu.org/software/libgcrypt/" + url = "ftp://ftp.gnupg.org/gcrypt/libgcrypt/libgcrypt-1.6.2.tar.bz2" + + version('1.6.2', 'b54395a93cb1e57619943c082da09d5f') + + depends_on("libgpg-error") + + def install(self, spec, prefix): + configure("--prefix=%s" % prefix) + make() + make("install") diff --git a/var/spack/packages/libgpg-error/package.py b/var/spack/packages/libgpg-error/package.py new file mode 100644 index 0000000000..6c1d1a10a7 --- /dev/null +++ b/var/spack/packages/libgpg-error/package.py @@ -0,0 +1,17 @@ +from spack import * + +class LibgpgError(Package): + """Libgpg-error is a small library that defines common error + values for all GnuPG components. Among these are GPG, GPGSM, + GPGME, GPG-Agent, libgcrypt, Libksba, DirMngr, Pinentry, + SmartCard Daemon and possibly more in the future. """ + + homepage = "https://www.gnupg.org/related_software/libgpg-error" + url = "ftp://ftp.gnupg.org/gcrypt/libgpg-error/libgpg-error-1.18.tar.bz2" + + version('1.18', '12312802d2065774b787cbfc22cc04e9') + + def install(self, spec, prefix): + configure("--prefix=%s" % prefix) + make() + make("install") diff --git a/var/spack/packages/libpng/package.py b/var/spack/packages/libpng/package.py index c148a3d58c..e02b08663e 100644 --- a/var/spack/packages/libpng/package.py +++ b/var/spack/packages/libpng/package.py @@ -5,9 +5,9 @@ class Libpng(Package): homepage = "http://www.libpng.org/pub/png/libpng.html" url = "http://download.sourceforge.net/libpng/libpng-1.6.16.tar.gz" - version('1.6.14', '2101b3de1d5f348925990f9aa8405660') - version('1.6.15', '829a256f3de9307731d4f52dc071916d') version('1.6.16', '1a4ad377919ab15b54f6cb6a3ae2622d') + version('1.6.15', '829a256f3de9307731d4f52dc071916d') + version('1.6.14', '2101b3de1d5f348925990f9aa8405660') def install(self, spec, prefix): configure("--prefix=%s" % prefix) diff --git a/var/spack/packages/libxcb/package.py b/var/spack/packages/libxcb/package.py new file mode 100644 index 0000000000..521cd0d475 --- /dev/null +++ b/var/spack/packages/libxcb/package.py @@ -0,0 +1,21 @@ +from spack import * + +class Libxcb(Package): + """The X protocol C-language Binding (XCB) is a replacement + for Xlib featuring a small footprint, latency hiding, direct + access to the protocol, improved threading support, and + extensibility.""" + + homepage = "http://xcb.freedesktop.org/" + url = "http://xcb.freedesktop.org/dist/libxcb-1.11.tar.gz" + + version('1.11', '1698dd837d7e6e94d029dbe8b3a82deb') + + depends_on("python") + depends_on("xcb-proto") + + def install(self, spec, prefix): + configure("--prefix=%s" % prefix) + + make() + make("install") diff --git a/var/spack/packages/libxml2/package.py b/var/spack/packages/libxml2/package.py index 5eaed36d94..72199d8def 100644 --- a/var/spack/packages/libxml2/package.py +++ b/var/spack/packages/libxml2/package.py @@ -9,6 +9,9 @@ class Libxml2(Package): version('2.9.2', '9e6a9aca9d155737868b3dc5fd82f788') + depends_on('zlib') + depends_on('xz') + def install(self, spec, prefix): configure("--prefix=%s" % prefix, "--without-python") diff --git a/var/spack/packages/libxshmfence/package.py b/var/spack/packages/libxshmfence/package.py new file mode 100644 index 0000000000..3aa2448b46 --- /dev/null +++ b/var/spack/packages/libxshmfence/package.py @@ -0,0 +1,16 @@ +from spack import * + +class Libxshmfence(Package): + """This is a tiny library that exposes a event API on top of Linux + futexes.""" + + homepage = "http://keithp.com/blogs/dri3_extension/" # not really... + url = "http://xorg.freedesktop.org/archive/individual/lib/libxshmfence-1.2.tar.gz" + + version('1.2', 'f0b30c0fc568b22ec524859ee28556f1') + + def install(self, spec, prefix): + configure("--prefix=%s" % prefix) + + make() + make("install") diff --git a/var/spack/packages/libxslt/package.py b/var/spack/packages/libxslt/package.py new file mode 100644 index 0000000000..f97332d020 --- /dev/null +++ b/var/spack/packages/libxslt/package.py @@ -0,0 +1,24 @@ +from spack import * + +class Libxslt(Package): + """Libxslt is the XSLT C library developed for the GNOME + project. XSLT itself is a an XML language to define + transformation for XML. Libxslt is based on libxml2 the XML C + library developed for the GNOME project. It also implements + most of the EXSLT set of processor-portable extensions + functions and some of Saxon's evaluate and expressions + extensions.""" + homepage = "http://www.xmlsoft.org/XSLT/index.html" + url = "http://xmlsoft.org/sources/libxslt-1.1.28.tar.gz" + + version('1.1.28', '9667bf6f9310b957254fdcf6596600b7') + + depends_on("libxml2") + depends_on("xz") + depends_on("zlib") + depends_on("libgcrypt") + + def install(self, spec, prefix): + configure("--prefix=%s" % prefix) + make() + make("install") diff --git a/var/spack/packages/llvm/package.py b/var/spack/packages/llvm/package.py index c7a10df55a..9d2be690bb 100644 --- a/var/spack/packages/llvm/package.py +++ b/var/spack/packages/llvm/package.py @@ -32,9 +32,13 @@ class Llvm(Package): it is the full name of the project. """ homepage = "http://llvm.org/" - url = "http://llvm.org/releases/3.4.2/llvm-3.4.2.src.tar.gz" + list_url = "http://llvm.org/releases/download.html" - version('3.4.2', 'a20669f75967440de949ac3b1bad439c') + version('3.5.1', '2d3d8004f38852aa679e5945b8ce0b14', url='http://llvm.org/releases/3.5.1/llvm-3.5.1.src.tar.xz') + version('3.4.2', 'a20669f75967440de949ac3b1bad439c', url='http://llvm.org/releases/3.4.2/llvm-3.4.2.src.tar.gz') + version('3.0', 'a8e5f5f1c1adebae7b4a654c376a6005', url='http://llvm.org/releases/3.0/llvm-3.0.tar.gz') + version('2.9', '793138412d2af2c7c7f54615f8943771', url='http://llvm.org/releases/2.9/llvm-2.9.tgz') + version('2.8', '220d361b4d17051ff4bb21c64abe05ba', url='http://llvm.org/releases/2.8/llvm-2.8.tgz') def install(self, spec, prefix): env['CXXFLAGS'] = self.compiler.cxx11_flag diff --git a/var/spack/packages/memaxes/package.py b/var/spack/packages/memaxes/package.py new file mode 100644 index 0000000000..afa62009a6 --- /dev/null +++ b/var/spack/packages/memaxes/package.py @@ -0,0 +1,20 @@ +from spack import * + +class Memaxes(Package): + """MemAxes is a visualizer for sampled memory trace data.""" + + homepage = "https://github.com/scalability-llnl/MemAxes" + + version('0.5', 'b0f561d48aa7301e028d074bc4b5751b', + url='https://github.com/scalability-llnl/MemAxes/archive/v0.5.tar.gz') + + depends_on("cmake@2.8.9:") + depends_on("qt@5:") + depends_on("vtk") + + def install(self, spec, prefix): + with working_dir('spack-build', create=True): + cmake('..', *std_cmake_args) + make() + make("install") + diff --git a/var/spack/packages/mesa/package.py b/var/spack/packages/mesa/package.py new file mode 100644 index 0000000000..2dba878a77 --- /dev/null +++ b/var/spack/packages/mesa/package.py @@ -0,0 +1,33 @@ +from spack import * + +class Mesa(Package): + """Mesa is an open-source implementation of the OpenGL + specification - a system for rendering interactive 3D graphics.""" + + homepage = "http://www.mesa3d.org" + url = "ftp://ftp.freedesktop.org/pub/mesa/older-versions/8.x/8.0.5/MesaLib-8.0.5.tar.gz" + # url = "ftp://ftp.freedesktop.org/pub/mesa/10.4.4/MesaLib-10.4.4.tar.gz" + + # version('10.4.4', '8d863a3c209bf5116b2babfccccc68ce') + version('8.0.5', 'cda5d101f43b8784fa60bdeaca4056f2') + + # mesa 7.x, 8.x, 9.x + depends_on("libdrm@2.4.33") + depends_on("llvm@3.0") + + # patch("llvm-fixes.patch") # using newer llvm + + # mesa 10.x + # depends_on("py-mako") + # depends_on("flex") + # depends_on("bison") + # depends_on("dri2proto") + # depends_on("libxcb") + # depends_on("libxshmfence") + + + def install(self, spec, prefix): + configure("--prefix=%s" % prefix) + + make() + make("install") diff --git a/var/spack/packages/netcdf/package.py b/var/spack/packages/netcdf/package.py new file mode 100644 index 0000000000..34284ea725 --- /dev/null +++ b/var/spack/packages/netcdf/package.py @@ -0,0 +1,28 @@ +from spack import * + +class Netcdf(Package): + """NetCDF is a set of software libraries and self-describing, machine-independent + data formats that support the creation, access, and sharing of array-oriented + scientific data.""" + + homepage = "http://www.unidata.ucar.edu/software/netcdf/" + url = "ftp://ftp.unidata.ucar.edu/pub/netcdf/netcdf-4.3.3.tar.gz" + + version('4.3.3', '5fbd0e108a54bd82cb5702a73f56d2ae') + + # Dependencies: + # >HDF5 + depends_on("hdf5") + + def install(self, spec, prefix): + configure( + "--prefix=%s" % prefix, + "--disable-dap", # Disable DAP. + "--disable-shared", # Don't build shared libraries (use static libs). + "CPPFLAGS=-I%s/include" % spec['hdf5'].prefix, # Link HDF5's include dir. + "LDFLAGS=-L%s/lib" % spec['hdf5'].prefix) # Link HDF5's lib dir. + + make("install") + + # Check the newly installed netcdf package. Currently disabled. + # make("check") diff --git a/var/spack/packages/py-basemap/package.py b/var/spack/packages/py-basemap/package.py new file mode 100644 index 0000000000..45f1085ba1 --- /dev/null +++ b/var/spack/packages/py-basemap/package.py @@ -0,0 +1,20 @@ +from spack import * +import os + +class PyBasemap(Package): + """The matplotlib basemap toolkit is a library for plotting 2D data on maps in Python.""" + homepage = "http://matplotlib.org/basemap/" + url = "https://downloads.sourceforge.net/project/matplotlib/matplotlib-toolkits/basemap-1.0.7/basemap-1.0.7.tar.gz" + + version('1.0.7', '48c0557ced9e2c6e440b28b3caff2de8') + + extends('python') + depends_on('py-setuptools') + depends_on('py-numpy') + depends_on('py-matplotlib') + depends_on('py-pil') + depends_on("geos") + + def install(self, spec, prefix): + env['GEOS_DIR'] = spec['geos'].prefix + python('setup.py', 'install', '--prefix=%s' % prefix) diff --git a/var/spack/packages/py-biopython/package.py b/var/spack/packages/py-biopython/package.py new file mode 100644 index 0000000000..8ecaf48626 --- /dev/null +++ b/var/spack/packages/py-biopython/package.py @@ -0,0 +1,15 @@ +from spack import * + +class PyBiopython(Package): + """It is a distributed collaborative effort to develop Python libraries and applications which address the needs of current and future work in bioinformatics.""" + homepage = "http://biopython.org/wiki/Main_Page" + url = "http://biopython.org/DIST/biopython-1.65.tar.gz" + + version('1.65', '143e7861ade85c0a8b5e2bbdd1da1f67') + + extends('python') + depends_on('py-mx') + depends_on('py-numpy') + + def install(self, spec, prefix): + python('setup.py', 'install', '--prefix=%s' % prefix) diff --git a/var/spack/packages/py-cython/package.py b/var/spack/packages/py-cython/package.py new file mode 100644 index 0000000000..af67a15526 --- /dev/null +++ b/var/spack/packages/py-cython/package.py @@ -0,0 +1,13 @@ +from spack import * + +class PyCython(Package): + """The Cython compiler for writing C extensions for the Python language.""" + homepage = "https://pypi.python.org/pypi/cython" + url = "https://pypi.python.org/packages/source/C/Cython/Cython-0.21.2.tar.gz" + + version('0.21.2', 'd21adb870c75680dc857cd05d41046a4') + + extends('python') + + def install(self, spec, prefix): + python('setup.py', 'install', '--prefix=%s' % prefix) diff --git a/var/spack/packages/py-dateutil/package.py b/var/spack/packages/py-dateutil/package.py new file mode 100644 index 0000000000..3bd2f2ca13 --- /dev/null +++ b/var/spack/packages/py-dateutil/package.py @@ -0,0 +1,15 @@ +from spack import * + +class PyDateutil(Package): + """Extensions to the standard Python datetime module.""" + homepage = "https://pypi.python.org/pypi/dateutil" + url = "https://pypi.python.org/packages/source/p/python-dateutil/python-dateutil-2.4.0.tar.gz" + + version('2.4.0', '75714163bb96bedd07685cdb2071b8bc') + + extends('python') + depends_on('py-setuptools') + depends_on('py-six') + + def install(self, spec, prefix): + python('setup.py', 'install', '--prefix=%s' % prefix) diff --git a/var/spack/packages/py-epydoc/package.py b/var/spack/packages/py-epydoc/package.py new file mode 100644 index 0000000000..af05510504 --- /dev/null +++ b/var/spack/packages/py-epydoc/package.py @@ -0,0 +1,13 @@ +from spack import * + +class PyEpydoc(Package): + """Epydoc is a tool for generating API documentation documentation for Python modules, based on their docstrings.""" + homepage = "https://pypi.python.org/pypi/epydoc" + url = "https://pypi.python.org/packages/source/e/epydoc/epydoc-3.0.1.tar.gz" + + version('3.0.1', '36407974bd5da2af00bf90ca27feeb44') + + extends('python') + + def install(self, spec, prefix): + python('setup.py', 'install', '--prefix=%s' % prefix) diff --git a/var/spack/packages/py-gnuplot/package.py b/var/spack/packages/py-gnuplot/package.py new file mode 100644 index 0000000000..ede4472c03 --- /dev/null +++ b/var/spack/packages/py-gnuplot/package.py @@ -0,0 +1,14 @@ +from spack import * + +class PyGnuplot(Package): + """Gnuplot.py is a Python package that allows you to create graphs from within Python using the gnuplot plotting program.""" + homepage = "http://gnuplot-py.sourceforge.net/" + url = "http://downloads.sourceforge.net/project/gnuplot-py/Gnuplot-py/1.8/gnuplot-py-1.8.tar.gz" + + version('1.8', 'abd6f571e7aec68ae7db90a5217cd5b1') + + extends('python') + depends_on('py-numpy') + + def install(self, spec, prefix): + python('setup.py', 'install', '--prefix=%s' % prefix) diff --git a/var/spack/packages/py-h5py/package.py b/var/spack/packages/py-h5py/package.py new file mode 100644 index 0000000000..f72b3ac06e --- /dev/null +++ b/var/spack/packages/py-h5py/package.py @@ -0,0 +1,18 @@ +from spack import * +import re + +class PyH5py(Package): + """The h5py package provides both a high- and low-level interface to the HDF5 library from Python.""" + homepage = "https://pypi.python.org/pypi/h5py" + url = "https://pypi.python.org/packages/source/h/h5py/h5py-2.4.0.tar.gz" + + version('2.4.0', '80c9a94ae31f84885cc2ebe1323d6758') + + extends('python', ignore=lambda f: re.match(r'cy*', f)) + depends_on('hdf5') + depends_on('py-numpy') + depends_on('py-cython') + + def install(self, spec, prefix): + python('setup.py', 'configure', '--hdf5=%s' % spec['hdf5'].prefix) + python('setup.py', 'install', '--prefix=%s' % prefix) diff --git a/var/spack/packages/py-ipython/package.py b/var/spack/packages/py-ipython/package.py new file mode 100644 index 0000000000..907ea9edcd --- /dev/null +++ b/var/spack/packages/py-ipython/package.py @@ -0,0 +1,15 @@ +from spack import * + +class PyIpython(Package): + """IPython provides a rich toolkit to help you make the most out of using Python interactively.""" + homepage = "https://pypi.python.org/pypi/ipython" + url = "https://pypi.python.org/packages/source/i/ipython/ipython-2.3.1.tar.gz" + + version('2.3.1', '2b7085525dac11190bfb45bb8ec8dcbf') + + extends('python') + depends_on('py-pygments') + depends_on('py-setuptools') + + def install(self, spec, prefix): + python('setup.py', 'install', '--prefix=%s' % prefix) diff --git a/var/spack/packages/py-libxml2/package.py b/var/spack/packages/py-libxml2/package.py new file mode 100644 index 0000000000..59005428e4 --- /dev/null +++ b/var/spack/packages/py-libxml2/package.py @@ -0,0 +1,15 @@ +from spack import * + +class PyLibxml2(Package): + """A Python wrapper around libxml2.""" + homepage = "https://xmlsoft.org/python.html" + url = "ftp://xmlsoft.org/libxml2/python/libxml2-python-2.6.21.tar.gz" + + version('2.6.21', '229dd2b3d110a77defeeaa73af83f7f3') + + extends('python') + depends_on('libxml2') + depends_on('libxslt') + + def install(self, spec, prefix): + python('setup.py', 'install', '--prefix=%s' % prefix) diff --git a/var/spack/packages/py-mako/package.py b/var/spack/packages/py-mako/package.py new file mode 100644 index 0000000000..3e91ffd8e5 --- /dev/null +++ b/var/spack/packages/py-mako/package.py @@ -0,0 +1,16 @@ +from spack import * + +class PyMako(Package): + """A super-fast templating language that borrows the best + ideas from the existing templating languages.""" + + homepage = "https://pypi.python.org/pypi/mako" + url = "https://pypi.python.org/packages/source/M/Mako/Mako-1.0.1.tar.gz" + + version('1.0.1', '9f0aafd177b039ef67b90ea350497a54') + + depends_on('py-setuptools') + extends('python') + + def install(self, spec, prefix): + python('setup.py', 'install', '--prefix=%s' % prefix) diff --git a/var/spack/packages/py-matplotlib/package.py b/var/spack/packages/py-matplotlib/package.py new file mode 100644 index 0000000000..04037f004e --- /dev/null +++ b/var/spack/packages/py-matplotlib/package.py @@ -0,0 +1,46 @@ +from spack import * +import os + +class PyMatplotlib(Package): + """Python plotting package.""" + homepage = "https://pypi.python.org/pypi/matplotlib" + url = "https://pypi.python.org/packages/source/m/matplotlib/matplotlib-1.4.2.tar.gz" + + version('1.4.2', '7d22efb6cce475025733c50487bd8898') + + extends('python', ignore=r'bin/nosetests.*$') + + depends_on('py-pyside') + depends_on('py-ipython') + depends_on('py-pyparsing') + depends_on('py-six') + depends_on('py-dateutil') + depends_on('py-pytz') + depends_on('py-nose') + depends_on('py-numpy') + + depends_on('qt') + depends_on('bzip2') + depends_on('tcl') + depends_on('tk') + depends_on('qhull') + + def install(self, spec, prefix): + python('setup.py', 'install', '--prefix=%s' % prefix) + + if str(self.version) == '1.4.2': + # hack to fix configuration file + config_file = None + for p,d,f in os.walk(prefix.lib): + for file in f: + if file.find('matplotlibrc') != -1: + config_file = join_path(p, 'matplotlibrc') + print config_file + if config_file == None: + raise InstallError('could not find config file') + filter_file(r'backend : pyside', + 'backend : Qt4Agg', + config_file) + filter_file(r'#backend.qt4 : PyQt4', + 'backend.qt4 : PySide', + config_file) diff --git a/var/spack/packages/py-mpi4py/package.py b/var/spack/packages/py-mpi4py/package.py new file mode 100644 index 0000000000..8001689a18 --- /dev/null +++ b/var/spack/packages/py-mpi4py/package.py @@ -0,0 +1,14 @@ +from spack import * + +class PyMpi4py(Package): + """This package provides Python bindings for the Message Passing Interface (MPI) standard. It is implemented on top of the MPI-1/MPI-2 specification and exposes an API which grounds on the standard MPI-2 C++ bindings.""" + homepage = "https://pypi.python.org/pypi/mpi4py" + url = "https://pypi.python.org/packages/source/m/mpi4py/mpi4py-1.3.1.tar.gz" + + version('1.3.1', 'dbe9d22bdc8ed965c23a7ceb6f32fc3c') + extends('python') + depends_on('py-setuptools') + depends_on('mpi') + + def install(self, spec, prefix): + python('setup.py', 'install', '--prefix=%s' % prefix) diff --git a/var/spack/packages/py-mx/package.py b/var/spack/packages/py-mx/package.py new file mode 100644 index 0000000000..717ee0562b --- /dev/null +++ b/var/spack/packages/py-mx/package.py @@ -0,0 +1,13 @@ +from spack import * + +class PyMx(Package): + """The eGenix.com mx Base Distribution for Python is a collection of professional quality software tools which enhance Python's usability in many important areas such as fast text searching, date/time processing and high speed data types.""" + homepage = "http://www.egenix.com/products/python/mxBase/" + url = "https://downloads.egenix.com/python/egenix-mx-base-3.2.8.tar.gz" + + version('3.2.8', '9d9d3a25f9dc051a15e97f452413423b') + + extends('python') + + def install(self, spec, prefix): + python('setup.py', 'install', '--prefix=%s' % prefix) diff --git a/var/spack/packages/py-nose/package.py b/var/spack/packages/py-nose/package.py new file mode 100644 index 0000000000..155019289d --- /dev/null +++ b/var/spack/packages/py-nose/package.py @@ -0,0 +1,16 @@ +from spack import * + +class PyNose(Package): + """nose extends the test loading and running features of unittest, + making it easier to write, find and run tests.""" + + homepage = "https://pypi.python.org/pypi/nose" + url = "https://pypi.python.org/packages/source/n/nose/nose-1.3.4.tar.gz" + + version('1.3.4', '6ed7169887580ddc9a8e16048d38274d') + + extends('python', ignore=r'bin/nosetests.*$') + depends_on('py-setuptools') + + def install(self, spec, prefix): + python('setup.py', 'install', '--prefix=%s' % prefix) diff --git a/var/spack/packages/py-numpy/package.py b/var/spack/packages/py-numpy/package.py new file mode 100644 index 0000000000..e6cb6a464f --- /dev/null +++ b/var/spack/packages/py-numpy/package.py @@ -0,0 +1,14 @@ +from spack import * + +class PyNumpy(Package): + """array processing for numbers, strings, records, and objects.""" + homepage = "https://pypi.python.org/pypi/numpy" + url = "https://pypi.python.org/packages/source/n/numpy/numpy-1.9.1.tar.gz" + + version('1.9.1', '78842b73560ec378142665e712ae4ad9') + + extends('python') + depends_on('py-nose') + + def install(self, spec, prefix): + python('setup.py', 'install', '--prefix=%s' % prefix) diff --git a/var/spack/packages/py-pexpect/package.py b/var/spack/packages/py-pexpect/package.py new file mode 100644 index 0000000000..ff5fac84e0 --- /dev/null +++ b/var/spack/packages/py-pexpect/package.py @@ -0,0 +1,13 @@ +from spack import * + +class PyPexpect(Package): + """Pexpect allows easy control of interactive console applications.""" + homepage = "https://pypi.python.org/pypi/pexpect" + url = "https://pypi.python.org/packages/source/p/pexpect/pexpect-3.3.tar.gz" + + version('3.3', '0de72541d3f1374b795472fed841dce8') + + extends('python') + + def install(self, spec, prefix): + python('setup.py', 'install', '--prefix=%s' % prefix) diff --git a/var/spack/packages/py-pil/package.py b/var/spack/packages/py-pil/package.py new file mode 100644 index 0000000000..743b761981 --- /dev/null +++ b/var/spack/packages/py-pil/package.py @@ -0,0 +1,14 @@ +from spack import * + +class PyPil(Package): + """The Python Imaging Library (PIL) adds image processing capabilities to your Python interpreter. This library supports many file formats, and provides powerful image processing and graphics capabilities.""" + + homepage = "http://www.pythonware.com/products/pil/" + url = "http://effbot.org/media/downloads/Imaging-1.1.7.tar.gz" + + version('1.1.7', 'fc14a54e1ce02a0225be8854bfba478e') + + extends('python') + + def install(self, spec, prefix): + python('setup.py', 'install', '--prefix=%s' % prefix) diff --git a/var/spack/packages/py-pmw/package.py b/var/spack/packages/py-pmw/package.py new file mode 100644 index 0000000000..56131811e9 --- /dev/null +++ b/var/spack/packages/py-pmw/package.py @@ -0,0 +1,13 @@ +from spack import * + +class PyPmw(Package): + """Pmw is a toolkit for building high-level compound widgets, or megawidgets, constructed using other widgets as component parts.""" + homepage = "https://pypi.python.org/pypi/Pmw" + url = "https://pypi.python.org/packages/source/P/Pmw/Pmw-2.0.0.tar.gz" + + version('2.0.0', 'c7c3f26c4f5abaa99807edefee578fc0') + + extends('python') + + def install(self, spec, prefix): + python('setup.py', 'install', '--prefix=%s' % prefix) diff --git a/var/spack/packages/py-pychecker/package.py b/var/spack/packages/py-pychecker/package.py new file mode 100644 index 0000000000..bda5a746aa --- /dev/null +++ b/var/spack/packages/py-pychecker/package.py @@ -0,0 +1,13 @@ +from spack import * + +class PyPychecker(Package): + """""" + homepage = "http://pychecker.sourceforge.net/" + url = "http://sourceforge.net/projects/pychecker/files/pychecker/0.8.19/pychecker-0.8.19.tar.gz" + + version('0.8.19', 'c37182863dfb09209d6ba4f38fce9d2b') + + extends('python') + + def install(self, spec, prefix): + python('setup.py', 'install', '--prefix=%s' % prefix) diff --git a/var/spack/packages/py-pygments/package.py b/var/spack/packages/py-pygments/package.py new file mode 100644 index 0000000000..990eebde65 --- /dev/null +++ b/var/spack/packages/py-pygments/package.py @@ -0,0 +1,14 @@ +from spack import * + +class PyPygments(Package): + """Pygments is a syntax highlighting package written in Python.""" + homepage = "https://pypi.python.org/pypi/pygments" + url = "https://pypi.python.org/packages/source/P/Pygments/Pygments-2.0.1.tar.gz" + + version('2.0.1', 'e0daf4c14a4fe5b630da765904de4d6c') + + extends('python') + depends_on('py-setuptools') + + def install(self, spec, prefix): + python('setup.py', 'install', '--prefix=%s' % prefix) diff --git a/var/spack/packages/py-pylint/package.py b/var/spack/packages/py-pylint/package.py new file mode 100644 index 0000000000..7a6ee7dbbc --- /dev/null +++ b/var/spack/packages/py-pylint/package.py @@ -0,0 +1,16 @@ +from spack import * +import re + +class PyPylint(Package): + """array processing for numbers, strings, records, and objects.""" + homepage = "https://pypi.python.org/pypi/pylint" + url = "https://pypi.python.org/packages/source/p/pylint/pylint-1.4.1.tar.gz" + + version('1.4.1', 'df7c679bdcce5019389038847e4de622') + + extends('python') + depends_on('py-nose') + depends_on('py-setuptools') + + def install(self, spec, prefix): + python('setup.py', 'install', '--prefix=%s' % prefix) diff --git a/var/spack/packages/py-pyparsing/package.py b/var/spack/packages/py-pyparsing/package.py new file mode 100644 index 0000000000..a6e50ad139 --- /dev/null +++ b/var/spack/packages/py-pyparsing/package.py @@ -0,0 +1,13 @@ +from spack import * + +class PyPyparsing(Package): + """A Python Parsing Module.""" + homepage = "https://pypi.python.org/pypi/pyparsing" + url = "https://pypi.python.org/packages/source/p/pyparsing/pyparsing-2.0.3.tar.gz" + + version('2.0.3', '0fe479be09fc2cf005f753d3acc35939') + + extends('python') + + def install(self, spec, prefix): + python('setup.py', 'install', '--prefix=%s' % prefix) diff --git a/var/spack/packages/py-pyqt/package.py b/var/spack/packages/py-pyqt/package.py new file mode 100644 index 0000000000..8edca105bb --- /dev/null +++ b/var/spack/packages/py-pyqt/package.py @@ -0,0 +1,24 @@ +from spack import * + +class PyPyqt(Package): + """PyQt is a set of Python v2 and v3 bindings for Digia's Qt + application framework and runs on all platforms supported by Qt + including Windows, MacOS/X and Linux.""" + homepage = "http://www.riverbankcomputing.com/software/pyqt/intro" + url = "http://sourceforge.net/projects/pyqt/files/PyQt4/PyQt-4.11.3/PyQt-x11-gpl-4.11.3.tar.gz" + + version('4.11.3', '997c3e443165a89a559e0d96b061bf70') + + extends('python') + depends_on('py-sip') + + # TODO: allow qt5 when conditional deps are supported. + # TODO: Fix version matching so that @4 works like @:4 + depends_on('qt@:4') + + def install(self, spec, prefix): + python('configure.py', + '--confirm-license', + '--destdir=%s' % site_packages_dir) + make() + make('install') diff --git a/var/spack/packages/py-pyside/package.py b/var/spack/packages/py-pyside/package.py new file mode 100644 index 0000000000..bb5da44d02 --- /dev/null +++ b/var/spack/packages/py-pyside/package.py @@ -0,0 +1,45 @@ +from spack import * +import os + +class PyPyside(Package): + """array processing for numbers, strings, records, and objects.""" + homepage = "https://pypi.python.org/pypi/pyside" + url = "https://pypi.python.org/packages/source/P/PySide/PySide-1.2.2.tar.gz" + + version('1.2.2', 'c45bc400c8a86d6b35f34c29e379e44d') + + # TODO: make build dependency + # depends_on("cmake") + + extends('python') + depends_on('py-setuptools') + depends_on('qt@:4') + + def patch(self): + """Undo PySide RPATH handling and add Spack RPATH.""" + # Figure out the special RPATH + pypkg = self.spec['python'].package + rpath = self.rpath + rpath.append(os.path.join(self.prefix, pypkg.site_packages_dir, 'PySide')) + + # Add Spack's standard CMake args to the sub-builds. + # They're called BY setup.py so we have to patch it. + filter_file( + r'OPTION_CMAKE,', + r'OPTION_CMAKE, ' + ( + '"-DCMAKE_INSTALL_RPATH_USE_LINK_PATH=FALSE", ' + '"-DCMAKE_INSTALL_RPATH=%s",' % ':'.join(rpath)), + 'setup.py') + + # PySide tries to patch ELF files to remove RPATHs + # Disable this and go with the one we set. + filter_file( + r'^\s*rpath_cmd\(pyside_path, srcpath\)', + r'#rpath_cmd(pyside_path, srcpath)', + 'pyside_postinstall.py') + + + def install(self, spec, prefix): + python('setup.py', 'install', + '--prefix=%s' % prefix, + '--jobs=%s' % make_jobs) diff --git a/var/spack/packages/py-pytz/package.py b/var/spack/packages/py-pytz/package.py new file mode 100644 index 0000000000..80bcfe82ca --- /dev/null +++ b/var/spack/packages/py-pytz/package.py @@ -0,0 +1,13 @@ +from spack import * + +class PyPytz(Package): + """World timezone definitions, modern and historical.""" + homepage = "https://pypi.python.org/pypi/pytz" + url = "https://pypi.python.org/packages/source/p/pytz/pytz-2014.10.tar.gz" + + version('2014.10', 'eb1cb941a20c5b751352c52486aa1dd7') + + extends('python') + + def install(self, spec, prefix): + python('setup.py', 'install', '--prefix=%s' % prefix) diff --git a/var/spack/packages/py-rpy2/package.py b/var/spack/packages/py-rpy2/package.py new file mode 100644 index 0000000000..dd0c0672af --- /dev/null +++ b/var/spack/packages/py-rpy2/package.py @@ -0,0 +1,16 @@ +from spack import * + +class PyRpy2(Package): + """rpy2 is a redesign and rewrite of rpy. It is providing a low-level interface to R from Python, a proposed high-level interface, including wrappers to graphical libraries, as well as R-like structures and functions.""" + homepage = "https://pypi.python.org/pypi/rpy2" + url = "https://pypi.python.org/packages/source/r/rpy2/rpy2-2.5.4.tar.gz" + + version('2.5.4', '115a20ac30883f096da2bdfcab55196d') + + extends('python') + depends_on('py-setuptools') + + depends_on('R') + + def install(self, spec, prefix): + python('setup.py', 'install', '--prefix=%s' % prefix) diff --git a/var/spack/packages/py-scientificpython/package.py b/var/spack/packages/py-scientificpython/package.py new file mode 100644 index 0000000000..020d830703 --- /dev/null +++ b/var/spack/packages/py-scientificpython/package.py @@ -0,0 +1,17 @@ +from spack import * + +class PyScientificpython(Package): + """ScientificPython is a collection of Python modules for + scientific computing. It contains support for geometry, + mathematical functions, statistics, physical units, IO, + visualization, and parallelization.""" + + homepage = "https://sourcesup.renater.fr/projects/scientific-py/" + url = "https://sourcesup.renater.fr/frs/download.php/4411/ScientificPython-2.8.1.tar.gz" + + version('2.8.1', '73ee0df19c7b58cdf2954261f0763c77') + + extends('python') + + def install(self, spec, prefix): + python('setup.py', 'install', '--prefix=%s' % prefix) diff --git a/var/spack/packages/py-scikit-learn/package.py b/var/spack/packages/py-scikit-learn/package.py new file mode 100644 index 0000000000..c59c05a619 --- /dev/null +++ b/var/spack/packages/py-scikit-learn/package.py @@ -0,0 +1,13 @@ +from spack import * + +class PyScikitLearn(Package): + """""" + homepage = "https://pypi.python.org/pypi/scikit-learn" + url = "https://pypi.python.org/packages/source/s/scikit-learn/scikit-learn-0.15.2.tar.gz" + + version('0.15.2', 'd9822ad0238e17b382a3c756ea94fe0d') + + extends('python') + + def install(self, spec, prefix): + python('setup.py', 'install', '--prefix=%s' % prefix) diff --git a/var/spack/packages/py-scipy/package.py b/var/spack/packages/py-scipy/package.py new file mode 100644 index 0000000000..b5325b919f --- /dev/null +++ b/var/spack/packages/py-scipy/package.py @@ -0,0 +1,15 @@ +from spack import * + +class PyScipy(Package): + """Scientific Library for Python.""" + homepage = "https://pypi.python.org/pypi/scipy" + url = "https://pypi.python.org/packages/source/s/scipy/scipy-0.15.0.tar.gz" + + version('0.15.0', '639112f077f0aeb6d80718dc5019dc7a') + + extends('python') + depends_on('py-nose') + depends_on('py-numpy') + + def install(self, spec, prefix): + python('setup.py', 'install', '--prefix=%s' % prefix) diff --git a/var/spack/packages/py-setuptools/package.py b/var/spack/packages/py-setuptools/package.py new file mode 100644 index 0000000000..755288d55c --- /dev/null +++ b/var/spack/packages/py-setuptools/package.py @@ -0,0 +1,13 @@ +from spack import * + +class PySetuptools(Package): + """Easily download, build, install, upgrade, and uninstall Python packages.""" + homepage = "https://pypi.python.org/pypi/setuptools" + url = "https://pypi.python.org/packages/source/s/setuptools/setuptools-11.3.tar.gz" + + version('11.3.1', '01f69212e019a2420c1693fb43593930') + + extends('python') + + def install(self, spec, prefix): + python('setup.py', 'install', '--prefix=%s' % prefix) diff --git a/var/spack/packages/py-shiboken/package.py b/var/spack/packages/py-shiboken/package.py new file mode 100644 index 0000000000..e4bf4ce07e --- /dev/null +++ b/var/spack/packages/py-shiboken/package.py @@ -0,0 +1,45 @@ +from spack import * +import os + +class PyShiboken(Package): + """Shiboken generates bindings for C++ libraries using CPython source code.""" + homepage = "https://shiboken.readthedocs.org/" + url = "https://pypi.python.org/packages/source/S/Shiboken/Shiboken-1.2.2.tar.gz" + + version('1.2.2', '345cfebda221f525842e079a6141e555') + + # TODO: make build dependency + # depends_on("cmake") + + extends('python') + depends_on("py-setuptools") + depends_on("libxml2") + depends_on("qt@:4.8") + + def patch(self): + """Undo Shiboken RPATH handling and add Spack RPATH.""" + # Add Spack's standard CMake args to the sub-builds. + # They're called BY setup.py so we have to patch it. + pypkg = self.spec['python'].package + rpath = self.rpath + rpath.append(os.path.join(self.prefix, pypkg.site_packages_dir, 'Shiboken')) + + filter_file( + r'OPTION_CMAKE,', + r'OPTION_CMAKE, ' + ( + '"-DCMAKE_INSTALL_RPATH_USE_LINK_PATH=FALSE", ' + '"-DCMAKE_INSTALL_RPATH=%s",' % ':'.join(rpath)), + 'setup.py') + + # Shiboken tries to patch ELF files to remove RPATHs + # Disable this and go with the one we set. + filter_file( + r'^\s*rpath_cmd\(shiboken_path, srcpath\)', + r'#rpath_cmd(shiboken_path, srcpath)', + 'shiboken_postinstall.py') + + + def install(self, spec, prefix): + python('setup.py', 'install', + '--prefix=%s' % prefix, + '--jobs=%s' % make_jobs) diff --git a/var/spack/packages/py-sip/package.py b/var/spack/packages/py-sip/package.py new file mode 100644 index 0000000000..6753bdd2a5 --- /dev/null +++ b/var/spack/packages/py-sip/package.py @@ -0,0 +1,20 @@ +from spack import * +import os + +class PySip(Package): + """SIP is a tool that makes it very easy to create Python bindings for C and C++ libraries.""" + homepage = "http://www.riverbankcomputing.com/software/sip/intro" + url = "http://sourceforge.net/projects/pyqt/files/sip/sip-4.16.5/sip-4.16.5.tar.gz" + + version('4.16.5', '6d01ea966a53e4c7ae5c5e48c40e49e5') + + extends('python') + + def install(self, spec, prefix): + python('configure.py', + '--destdir=%s' % site_packages_dir, + '--bindir=%s' % spec.prefix.bin, + '--incdir=%s' % python_include_dir, + '--sipdir=%s' % os.path.join(spec.prefix.share, 'sip')) + make() + make('install') diff --git a/var/spack/packages/py-six/package.py b/var/spack/packages/py-six/package.py new file mode 100644 index 0000000000..05c5bd00a9 --- /dev/null +++ b/var/spack/packages/py-six/package.py @@ -0,0 +1,14 @@ +from spack import * + +class PySix(Package): + """Python 2 and 3 compatibility utilities.""" + homepage = "https://pypi.python.org/pypi/six" + url = "https://pypi.python.org/packages/source/s/six/six-1.9.0.tar.gz" + + version('1.9.0', '476881ef4012262dfc8adc645ee786c4') + + extends('python') + depends_on('py-setuptools') + + def install(self, spec, prefix): + python('setup.py', 'install', '--prefix=%s' % prefix) diff --git a/var/spack/packages/py-sympy/package.py b/var/spack/packages/py-sympy/package.py new file mode 100644 index 0000000000..c17e35b95f --- /dev/null +++ b/var/spack/packages/py-sympy/package.py @@ -0,0 +1,13 @@ +from spack import * + +class PySympy(Package): + """SymPy is a Python library for symbolic mathematics.""" + homepage = "https://pypi.python.org/pypi/sympy" + url = "https://pypi.python.org/packages/source/s/sympy/sympy-0.7.6.tar.gz" + + version('0.7.6', '3d04753974306d8a13830008e17babca') + + extends('python') + + def install(self, spec, prefix): + python('setup.py', 'install', '--prefix=%s' % prefix) diff --git a/var/spack/packages/py-virtualenv/package.py b/var/spack/packages/py-virtualenv/package.py new file mode 100644 index 0000000000..2d10d440a6 --- /dev/null +++ b/var/spack/packages/py-virtualenv/package.py @@ -0,0 +1,15 @@ +from spack import * +import shutil + +class PyVirtualenv(Package): + """virtualenv is a tool to create isolated Python environments.""" + homepage = "http://virtualenv.readthedocs.org/projects/virtualenv/" + url = "https://pypi.python.org/packages/source/v/virtualenv/virtualenv-1.11.6.tar.gz" + + version('1.11.6', 'f61cdd983d2c4e6aeabb70b1060d6f49') + + extends('python') + depends_on('py-setuptools') + + def install(self, spec, prefix): + python('setup.py', 'install', '--prefix=%s' % prefix) diff --git a/var/spack/packages/python/package.py b/var/spack/packages/python/package.py index e6c3e28820..31a12ea653 100644 --- a/var/spack/packages/python/package.py +++ b/var/spack/packages/python/package.py @@ -1,10 +1,19 @@ +import os +import re +from contextlib import closing +from llnl.util.lang import match_predicate + from spack import * +import spack + class Python(Package): """The Python programming language.""" homepage = "http://www.python.org" url = "http://www.python.org/ftp/python/2.7.8/Python-2.7.8.tar.xz" + extendable = True + version('2.7.8', 'd235bdfa75b8396942e360a70487ee00') depends_on("openssl") @@ -23,3 +32,126 @@ class Python(Package): "--enable-shared") make() make("install") + + + # ======================================================================== + # Set up environment to make install easy for python extensions. + # ======================================================================== + + @property + def python_lib_dir(self): + return os.path.join('lib', 'python%d.%d' % self.version[:2]) + + + @property + def python_include_dir(self): + return os.path.join('include', 'python%d.%d' % self.version[:2]) + + + @property + def site_packages_dir(self): + return os.path.join(self.python_lib_dir, 'site-packages') + + + def setup_dependent_environment(self, module, spec, ext_spec): + """Called before python modules' install() methods. + + In most cases, extensions will only need to have one line:: + + python('setup.py', 'install', '--prefix=%s' % prefix) + """ + # Python extension builds can have a global python executable function + module.python = Executable(join_path(spec.prefix.bin, 'python')) + + # Add variables for lib/pythonX.Y and lib/pythonX.Y/site-packages dirs. + module.python_lib_dir = os.path.join(ext_spec.prefix, self.python_lib_dir) + module.python_include_dir = os.path.join(ext_spec.prefix, self.python_include_dir) + module.site_packages_dir = os.path.join(ext_spec.prefix, self.site_packages_dir) + + # Make the site packages directory if it does not exist already. + mkdirp(module.site_packages_dir) + + # Set PYTHONPATH to include site-packages dir for the + # extension and any other python extensions it depends on. + python_paths = [] + for d in ext_spec.traverse(): + if d.package.extends(self.spec): + python_paths.append(os.path.join(d.prefix, self.site_packages_dir)) + os.environ['PYTHONPATH'] = ':'.join(python_paths) + + + # ======================================================================== + # Handle specifics of activating and deactivating python modules. + # ======================================================================== + + def python_ignore(self, ext_pkg, args): + """Add some ignore files to activate/deactivate args.""" + ignore_arg = args.get('ignore', lambda f: False) + + # Always ignore easy-install.pth, as it needs to be merged. + patterns = [r'easy-install\.pth$'] + + # Ignore pieces of setuptools installed by other packages. + if ext_pkg.name != 'py-setuptools': + patterns.append(r'/site\.pyc?$') + patterns.append(r'setuptools\.pth') + patterns.append(r'bin/easy_install[^/]*$') + patterns.append(r'setuptools.*egg$') + + return match_predicate(ignore_arg, patterns) + + + def write_easy_install_pth(self, exts): + paths = [] + for ext in sorted(exts.values()): + ext_site_packages = os.path.join(ext.prefix, self.site_packages_dir) + easy_pth = "%s/easy-install.pth" % ext_site_packages + + if not os.path.isfile(easy_pth): + continue + + with closing(open(easy_pth)) as f: + for line in f: + line = line.rstrip() + + # Skip lines matching these criteria + if not line: continue + if re.search(r'^(import|#)', line): continue + if (ext.name != 'py-setuptools' and + re.search(r'setuptools.*egg$', line)): continue + + paths.append(line) + + site_packages = os.path.join(self.prefix, self.site_packages_dir) + main_pth = "%s/easy-install.pth" % site_packages + + if not paths: + if os.path.isfile(main_pth): + os.remove(main_pth) + + else: + with closing(open(main_pth, 'w')) as f: + f.write("import sys; sys.__plen = len(sys.path)\n") + for path in paths: + f.write("%s\n" % path) + f.write("import sys; new=sys.path[sys.__plen:]; del sys.path[sys.__plen:]; " + "p=getattr(sys,'__egginsert',0); sys.path[p:p]=new; sys.__egginsert = p+len(new)\n") + + + def activate(self, ext_pkg, **args): + args.update(ignore=self.python_ignore(ext_pkg, args)) + super(Python, self).activate(ext_pkg, **args) + + exts = spack.install_layout.extension_map(self.spec) + exts[ext_pkg.name] = ext_pkg.spec + self.write_easy_install_pth(exts) + + + def deactivate(self, ext_pkg, **args): + args.update(ignore=self.python_ignore(ext_pkg, args)) + super(Python, self).deactivate(ext_pkg, **args) + + exts = spack.install_layout.extension_map(self.spec) + if ext_pkg.name in exts: # Make deactivate idempotent. + del exts[ext_pkg.name] + self.write_easy_install_pth(exts) diff --git a/var/spack/packages/qhull/package.py b/var/spack/packages/qhull/package.py new file mode 100644 index 0000000000..9da4078a70 --- /dev/null +++ b/var/spack/packages/qhull/package.py @@ -0,0 +1,27 @@ +from spack import * + +class Qhull(Package): + """Qhull computes the convex hull, Delaunay triangulation, Voronoi + diagram, halfspace intersection about a point, furt hest-site + Delaunay triangulation, and furthest-site Voronoi diagram. The + source code runs in 2-d, 3-d, 4-d, and higher dimensions. Qhull + implements the Quickhull algorithm for computing the convex + hull. It handles roundoff errors from floating point + arithmetic. It computes volumes, surface areas, and + approximations to the convex hull. + + Qhull does not support triangulation of non-convex surfaces, + mesh generation of non-convex objects, medium-sized inputs in + 9-D and higher, alpha shapes, weighted Voronoi diagrams, + Voronoi volumes, or constrained Delaunay triangulations.""" + + homepage = "http://www.qhull.org" + + version('1.0', 'd0f978c0d8dfb2e919caefa56ea2953c', + url="http://www.qhull.org/download/qhull-2012.1-src.tgz") + + def install(self, spec, prefix): + with working_dir('spack-build', create=True): + cmake('..', *std_cmake_args) + make() + make("install") diff --git a/var/spack/packages/qt/package.py b/var/spack/packages/qt/package.py index 01f9de7f3c..4a9a867511 100644 --- a/var/spack/packages/qt/package.py +++ b/var/spack/packages/qt/package.py @@ -1,9 +1,20 @@ +import os from spack import * +import os class Qt(Package): """Qt is a comprehensive cross-platform C++ application framework.""" homepage = "http://qt.io" + list_url = 'http://download.qt-project.org/official_releases/qt/' + list_depth = 2 + version('5.4.0', 'e8654e4b37dd98039ba20da7a53877e6', + url='http://download.qt-project.org/official_releases/qt/5.4/5.4.0/single/qt-everywhere-opensource-src-5.4.0.tar.gz') + version('5.3.2', 'febb001129927a70174467ecb508a682', + url='http://download.qt.io/archive/qt/5.3/5.3.2/single/qt-everywhere-opensource-src-5.3.2.tar.gz') + + version('5.2.1', 'a78408c887c04c34ce615da690e0b4c8', + url='http://download.qt.io/archive/qt/5.2/5.2.1/single/qt-everywhere-opensource-src-5.2.1.tar.gz') version('4.8.6', '2edbe4d6c2eff33ef91732602f3518eb', url="http://download.qt-project.org/official_releases/qt/4.8/4.8.6/qt-everywhere-opensource-src-4.8.6.tar.gz") @@ -20,25 +31,77 @@ class Qt(Package): depends_on("libmng") depends_on("jpeg") + # Webkit + # depends_on("gperf") + # depends_on("flex") + # depends_on("bison") + # depends_on("ruby") + # depends_on("icu4c") + + # OpenGL hardware acceleration + depends_on("mesa") + depends_on("libxcb") + + + def setup_dependent_environment(self, module, spec, dep_spec): + """Dependencies of Qt find it using the QTDIR environment variable.""" + os.environ['QTDIR'] = self.prefix + + def patch(self): + if self.spec.satisfies('@4'): + qmake_conf = 'mkspecs/common/g++-base.conf' + elif self.spec.satisfies('@5'): + qmake_conf = 'qtbase/mkspecs/common/g++-base.conf' + else: + return + # Fix qmake compilers in the default mkspec - qmake_conf = 'mkspecs/common/g++-base.conf' - filter_file(r'^QMAKE_CC *=.*$', 'QMAKE_CC = cc', qmake_conf) - filter_file(r'^QMAKE_CXX *=.*$', 'QMAKE_CXX = c++', qmake_conf) + filter_file(r'^QMAKE_COMPILER *=.*$', 'QMAKE_COMPILER = cc', qmake_conf) + filter_file(r'^QMAKE_CC *=.*$', 'QMAKE_CC = cc', qmake_conf) + filter_file(r'^QMAKE_CXX *=.*$', 'QMAKE_CXX = c++', qmake_conf) + + + + @property + def common_config_args(self): + return [ + '-prefix', self.prefix, + '-v', + '-opensource', + '-opengl', + "-release", + '-shared', + '-confirm-license', + '-openssl-linked', + '-dbus-linked', + '-optimized-qmake', + '-no-openvg', + '-no-pch', + # NIS is deprecated in more recent glibc + "-no-nis"] + # Don't disable all the database drivers, but should + # really get them into spack at some point. + + + @when('@4') + def configure(self): + configure('-fast', + '-no-webkit', + *self.common_config_args) + + + @when('@5') + def configure(self): + configure('-no-eglfs', + '-no-directfb', + '-qt-xcb', + # If someone wants to get a webkit build working, be my guest! + '-skip', 'qtwebkit', + *self.common_config_args) def install(self, spec, prefix): - configure('-v', - '-confirm-license', - '-opensource', - '-prefix', prefix, - '-openssl-linked', - '-dbus-linked', - '-fast', - '-optimized-qmake', - '-no-pch', - '-no-phonon', - '-no-phonon-backend', - '-no-openvg') + self.configure() make() make("install") diff --git a/var/spack/packages/ruby/package.py b/var/spack/packages/ruby/package.py new file mode 100644 index 0000000000..718fd0a3be --- /dev/null +++ b/var/spack/packages/ruby/package.py @@ -0,0 +1,16 @@ +from spack import * + +class Ruby(Package): + """A dynamic, open source programming language with a focus on + simplicity and productivity.""" + + homepage = "https://www.ruby-lang.org/" + url = "http://cache.ruby-lang.org/pub/ruby/2.2/ruby-2.2.0.tar.gz" + + version('2.2.0', 'cd03b28fd0b555970f5c4fd481700852') + + def install(self, spec, prefix): + configure("--prefix=%s" % prefix) + + make() + make("install") diff --git a/var/spack/packages/tcl/package.py b/var/spack/packages/tcl/package.py new file mode 100644 index 0000000000..529adf7788 --- /dev/null +++ b/var/spack/packages/tcl/package.py @@ -0,0 +1,22 @@ +from spack import * + +class Tcl(Package): + """Tcl (Tool Command Language) is a very powerful but easy to + learn dynamic programming language, suitable for a very wide + range of uses, including web and desktop applications, + networking, administration, testing and many more. Open source + and business-friendly, Tcl is a mature yet evolving language + that is truly cross platform, easily deployed and highly + extensible.""" + homepage = "http://www.tcl.tk" + + version('8.6.3', 'db382feca91754b7f93da16dc4cdad1f', + url="http://prdownloads.sourceforge.net/tcl/tcl8.6.3-src.tar.gz") + + depends_on('zlib') + + def install(self, spec, prefix): + with working_dir('unix'): + configure("--prefix=%s" % prefix) + make() + make("install") diff --git a/var/spack/packages/tk/package.py b/var/spack/packages/tk/package.py new file mode 100644 index 0000000000..96736f6f95 --- /dev/null +++ b/var/spack/packages/tk/package.py @@ -0,0 +1,22 @@ +from spack import * + +class Tk(Package): + """Tk is a graphical user interface toolkit that takes developing + desktop applications to a higher level than conventional + approaches. Tk is the standard GUI not only for Tcl, but for + many other dynamic languages, and can produce rich, native + applications that run unchanged across Windows, Mac OS X, Linux + and more.""" + homepage = "http://www.tcl.tk" + url = "http://prdownloads.sourceforge.net/tcl/tk8.6.3-src.tar.gz" + + version('src', '85ca4dbf4dcc19777fd456f6ee5d0221') + + depends_on("tcl") + + def install(self, spec, prefix): + with working_dir('unix'): + configure("--prefix=%s" % prefix, + "--with-tcl=%s" % spec['tcl'].prefix.lib) + make() + make("install") diff --git a/var/spack/packages/util-linux/package.py b/var/spack/packages/util-linux/package.py new file mode 100644 index 0000000000..cb7ceabf57 --- /dev/null +++ b/var/spack/packages/util-linux/package.py @@ -0,0 +1,20 @@ +from spack import * +import os + +class UtilLinux(Package): + """Util-linux is a suite of essential utilities for any Linux system.""" + + homepage = "http://freecode.com/projects/util-linux" + url = "https://www.kernel.org/pub/linux/utils/util-linux/v2.25/util-linux-2.25.tar.gz" + + version('2.25', 'f6d7fc6952ec69c4dc62c8d7c59c1d57') + + depends_on("python@2.7:") + + def install(self, spec, prefix): + configure("--prefix=%s" % prefix, + "PKG_CONFIG_PATH=%s/pkgconfig" % spec['python'].prefix.lib, + "--disable-use-tty-group") + + make() + make("install") diff --git a/var/spack/packages/vtk/package.py b/var/spack/packages/vtk/package.py new file mode 100644 index 0000000000..4a27a8fedb --- /dev/null +++ b/var/spack/packages/vtk/package.py @@ -0,0 +1,40 @@ +from spack import * + +class Vtk(Package): + """The Visualization Toolkit (VTK) is an open-source, freely + available software system for 3D computer graphics, image + processing and visualization. """ + homepage = "http://www.vtk.org" + url = "http://www.vtk.org/files/release/6.1/VTK-6.1.0.tar.gz" + + version('6.1.0', '25e4dfb3bad778722dcaec80cd5dab7d') + + depends_on("qt") + + def install(self, spec, prefix): + with working_dir('spack-build', create=True): + cmake_args = [ + "..", + "-DBUILD_SHARED_LIBS=ON", + # Disable wrappers for other languages. + "-DVTK_WRAP_PYTHON=OFF", + "-DVTK_WRAP_JAVA=OFF", + "-DVTK_WRAP_TCL=OFF"] + cmake_args.extend(std_cmake_args) + + # Enable Qt support here. + cmake_args.extend([ + "-DQT_QMAKE_EXECUTABLE:PATH=%s/qmake" % spec['qt'].prefix.bin, + "-DVTK_Group_Qt:BOOL=ON", + # Ignore webkit because it's hard to build w/Qt + "-DVTK_Group_Qt=OFF", + "-DModule_vtkGUISupportQt:BOOL=ON", + "-DModule_vtkGUISupportQtOpenGL:BOOL=ON" + ]) + + if spec['qt'].satisfies('@5'): + cmake_args.append("-DVTK_QT_VERSION:STRING=5") + + cmake(*cmake_args) + make() + make("install") diff --git a/var/spack/packages/xcb-proto/package.py b/var/spack/packages/xcb-proto/package.py new file mode 100644 index 0000000000..17a94bd892 --- /dev/null +++ b/var/spack/packages/xcb-proto/package.py @@ -0,0 +1,15 @@ +from spack import * + +class XcbProto(Package): + """Protocol for libxcb""" + + homepage = "http://xcb.freedesktop.org/" + url = "http://xcb.freedesktop.org/dist/xcb-proto-1.11.tar.gz" + + version('1.11', 'c8c6cb72c84f58270f4db1f39607f66a') + + def install(self, spec, prefix): + configure("--prefix=%s" % prefix) + + make() + make("install") |