Adding FASTMath uber package and missing FASTMath packages (#4120)

* adding 0.5.1 and variant for uint8 bit stream word type

* Revisions as per davydden

* fixing style (flake8) issues

* - switched to derive from MakefilePackage
- fixed typo in variant check
- Confirmed installs correctly with bswtuint8 variant

* added build method; changed zfp_incdir to incdir

* * Adding uber fastmath package to support 'spack install fastmath'
* Adding dims variant boxlib to control compile-time spatial dimension count
* Explicitly disabling many parts of moab to get lib to build. Don't need tools yet.
* Add logic to spack/setup-env to not refer to $SYS_TYPE if its not defined.

* adding mesquite package

* * Added Chombo (still working on Fortran name mangling)
* Made mesquite depend on mpi
* Fixed use of boxlib's dims numerical variant

* adding PUMI

* flake8 compliance

* adding phasta

* fixing flake8 issues

* undue $SYS_TYPE protection change

* fixing install step for fastmath uber package; resolve issues requested by adamjstewart in PR

* revisions as per adamjstewart

* re-enabling trilinos and phasta dependencies

* all changes requested modulu values= and assert statement

* fixing cmake_args usage in pumi; fixing lib installs for chombo

* first pass at numerical variant

* fixing dims variant as per @adamjstewart

* fixing func/var name collision

* fixing means of disabling -Werror

* fix name collision for cmake_args var/func

* fixing chombo homepage/url; make FASTMath use chombo#3.2; remove extraneous comment about boxlib dim

* remove dummy fastmath package; switch to @BarrySmith soln for install of dummy bundle

* fix flake8 import os issue

* remove extraneous comment

* adding url for fastmath scidac site

* final fixes as per @adamjstewart

* adding 1 dims option for boxlib

* switching make(all) to gmake(all)

10 files changed, 477 insertions, 3 deletions

diff --git a/var/spack/repos/builtin/packages/boxlib/package.py b/var/spack/repos/builtin/packages/boxlib/package.py
index 8d46014d3b..dd23c05fc3 100644
--- a/var/spack/repos/builtin/packages/boxlib/package.py
+++ b/var/spack/repos/builtin/packages/boxlib/package.py
@@ -36,12 +36,19 @@ class Boxlib(CMakePackage):
 
     depends_on('mpi')
 
+    variant('dims',
+        default='3',
+        values=('1', '2', '3'),
+        multi=False,
+        description='Number of spatial dimensions'
+    )
+
     def cmake_args(self):
         spec = self.spec
         options = []
 
         options.extend([
-            # '-DBL_SPACEDIM=3',
+            '-DBL_SPACEDIM=%d' % int(spec.variants['dims'].value),
             '-DENABLE_POSITION_INDEPENDENT_CODE=ON',
             '-DENABLE_FBASELIB=ON',
             '-DCMAKE_C_COMPILER=%s' % spec['mpi'].mpicc,
diff --git a/var/spack/repos/builtin/packages/chombo/Make.defs.local.template.patch b/var/spack/repos/builtin/packages/chombo/Make.defs.local.template.patch
new file mode 100644
index 0000000000..cc72659445
--- /dev/null
+++ b/var/spack/repos/builtin/packages/chombo/Make.defs.local.template.patch
@@ -0,0 +1,23 @@
+*** lib/mk/Make.defs.local.template	2017-05-02 16:00:16.000000000 -0700
+--- lib/mk/Make.defs.local.template.patched	2017-05-02 18:50:36.000000000 -0700
+***************
+*** 129,135 ****
+--- 129,137 ----
+  #HDFMPILIBFLAGS= -L<hdf_parallel_dir>/lib -lhdf5 -lz
+  #USE_MF        =
+  #USE_MT        =
++ #USE_LAPACK    =
+  #USE_SETVAL    =
++ #USE_TIMER     =
+  #CH_AR         =
+  #CH_CPP        =
+  #DOXYGEN       =
+***************
+*** 151,155 ****
+--- 153,158 ----
+  #ldoptflags    =
+  #ldprofflags   =
+  #syslibflags   =
++ #lapackincflags =
+  
+  #end  -- dont change this line
diff --git a/var/spack/repos/builtin/packages/chombo/hdf5-16api.patch b/var/spack/repos/builtin/packages/chombo/hdf5-16api.patch
new file mode 100644
index 0000000000..6525061886
--- /dev/null
+++ b/var/spack/repos/builtin/packages/chombo/hdf5-16api.patch
@@ -0,0 +1,12 @@
+*** lib/src/BoxTools/HDF5Portable.H	2017-05-02 13:57:57.000000000 -0700
+--- lib/src/BoxTools/HDF5Portable.H.patched	2017-05-02 13:55:30.000000000 -0700
+***************
+*** 15,20 ****
+--- 15,21 ----
+  extern "C"
+  {
+  #ifdef CH_USE_HDF5
++ #define H5_USE_16_API
+  #include <hdf5.h>
+  #else
+    typedef long hid_t;
diff --git a/var/spack/repos/builtin/packages/chombo/package.py b/var/spack/repos/builtin/packages/chombo/package.py
new file mode 100644
index 0000000000..1ae50e6bc0
--- /dev/null
+++ b/var/spack/repos/builtin/packages/chombo/package.py
@@ -0,0 +1,140 @@
+##############################################################################
+# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/llnl/spack
+# Please also see the LICENSE file for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+from shutil import copyfile
+import glob
+
+
+class Chombo(MakefilePackage):
+    """The Chombo package provides a set of tools for implementing finite
+       difference and finite-volume methods for the solution of partial
+       differential equations on block-structured adaptively refined
+       logically rectangular (i.e. Cartesian) grids."""
+
+    homepage = "https://commons.lbl.gov/display/chombo"
+    url      = "http://bitbucket.org/drhansj/chombo-xsdk.git"
+
+    # Use whatever path Brian V. and Terry L. agreed upon, but preserve version
+    version('3.2', git='http://bitbucket.org/drhansj/chombo-xsdk.git', commit='71d856c')
+    version('develop', git='http://bitbucket.org/drhansj/chombo-xsdk.git', tag='master')
+#    version('3.2', svn='https://anag-repo.lbl.gov/svn/Chombo/release/3.2')
+
+    variant('mpi', default=True, description='Enable MPI parallel support')
+    variant('hdf5', default=True, description='Enable HDF5 support')
+    variant('dims',
+        default='3',
+        values=('1', '2', '3', '4', '5', '6'),
+        multi=False,
+        description='Number of PDE dimensions [1-6]'
+    )
+
+    patch('hdf5-16api.patch', when='@3.2', level=0)
+    patch('Make.defs.local.template.patch', when='@3.2', level=0)
+
+    depends_on('blas')
+    depends_on('lapack')
+    depends_on('gmake', type='build')
+    depends_on('mpi', when='+mpi')
+    depends_on('hdf5', when='+hdf5')
+    depends_on('hdf5+mpi', when='+mpi+hdf5')
+
+    def edit(self, spec, prefix):
+
+        # Set fortran name mangling in Make.defs
+        defs_file = FileFilter('./lib/mk/Make.defs')
+        defs_file.filter('^\s*#\s*cppcallsfort\s*=\s*',
+                         'cppcallsfort = -DCH_FORT_UNDERSCORE')
+
+        # Set remaining variables in Make.defs.local
+        # Make.defs.local.template.patch ensures lines for USE_TIMER,
+        # USE_LAPACK and lapackincflags are present
+        copyfile('./lib/mk/Make.defs.local.template',
+                 './lib/mk/Make.defs.local')
+
+        defs_file = FileFilter('./lib/mk/Make.defs.local')
+
+        # Unconditional settings
+        defs_file.filter('^\s*#\s*DEBUG\s*=\s*', 'DEBUG = FALSE')
+        defs_file.filter('^\s*#\s*OPT\s*=\s*', 'OPT = TRUE')
+        defs_file.filter('^\s*#\s*PIC\s*=\s*', 'PIC = TRUE')
+        # timer code frequently fails compiles. So disable it.
+        defs_file.filter('^\s*#\s*USE_TIMER\s*=\s*', 'USE_TIMER = FALSE')
+
+        # LAPACK setup
+        lapack_blas = spec['lapack'].libs + spec['blas'].libs
+        defs_file.filter('^\s*#\s*USE_LAPACK\s*=\s*', 'USE_LAPACK = TRUE')
+        defs_file.filter(
+            '^\s*#\s*lapackincflags\s*=\s*',
+            'lapackincflags = -I%s' % spec['lapack'].prefix.include)
+        defs_file.filter(
+            '^\s*#\s*syslibflags\s*=\s*',
+            'syslibflags = %s' % lapack_blas.ld_flags)
+
+        # Compilers and Compiler flags
+        defs_file.filter('^\s*#\s*CXX\s*=\s*', 'CXX = %s' % spack_cxx)
+        defs_file.filter('^\s*#\s*FC\s*=\s*', 'FC = %s' % spack_fc)
+        if '+mpi' in spec:
+            defs_file.filter(
+                '^\s*#\s*MPICXX\s*=\s*',
+                'MPICXX = %s' % self.spec['mpi'].mpicxx)
+
+        # Conditionally determined settings
+        defs_file.filter(
+            '^\s*#\s*MPI\s*=\s*',
+            'MPI = %s' % ('TRUE' if '+mpi' in spec else 'FALSE'))
+        defs_file.filter(
+            '^\s*#\s*DIM\s*=\s*',
+            'DIM = %s' % spec.variants['dims'].value)
+
+        # HDF5 settings
+        if '+hdf5' in spec:
+            defs_file.filter('^\s*#\s*USE_HDF5\s*=\s*', 'USE_HDF5 = TRUE')
+            defs_file.filter(
+                '^\s*#\s*HDFINCFLAGS\s*=.*',
+                'HDFINCFLAGS = -I%s' % spec['hdf5'].prefix.include)
+            defs_file.filter(
+                '^\s*#\s*HDFLIBFLAGS\s*=.*',
+                'HDFLIBFLAGS = %s' % spec['hdf5'].libs.ld_flags)
+            if '+mpi' in spec:
+                defs_file.filter(
+                    '^\s*#\s*HDFMPIINCFLAGS\s*=.*',
+                    'HDFMPIINCFLAGS = -I%s' % spec['hdf5'].prefix.include)
+                defs_file.filter(
+                    '^\s*#\s*HDFMPILIBFLAGS\s*=.*',
+                    'HDFMPILIBFLAGS = %s' % spec['hdf5'].libs.ld_flags)
+
+    def build(self, spec, prefix):
+        with working_dir('lib'):
+            gmake('all')
+
+    def install(self, spec, prefix):
+        with working_dir('lib'):
+            install_tree('include', prefix.include)
+            libfiles = glob.glob('lib*.a')
+            libfiles += glob.glob('lib*.so')
+            libfiles += glob.glob('lib*.dylib')
+            mkdirp(prefix.lib)
+            for lib in libfiles:
+                install(lib, prefix.lib)
diff --git a/var/spack/repos/builtin/packages/fastmath/package.py b/var/spack/repos/builtin/packages/fastmath/package.py
new file mode 100644
index 0000000000..cae9b10ae4
--- /dev/null
+++ b/var/spack/repos/builtin/packages/fastmath/package.py
@@ -0,0 +1,65 @@
+##############################################################################
+# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/llnl/spack
+# Please also see the LICENSE file for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class Fastmath(Package):
+    """FASTMath is a suite of ~15 numerical libraries frequently used together
+    in various SciDAC and CSE applications. The suite includes discretization
+    libraries for structured, AMR and unstructured grids as well as solver
+    libraries for ODE's, Time Integrators, Iterative, Non-Linear, and Direct
+    Solvers."""
+
+    homepage = "www.fastmath-scidac.org/"
+    url = "https://github.com/citibeth/dummy/tarball/v1.0"
+
+    version('1.0', 'e2b724dfcc31d735897971db91be89ff')
+
+    # BundlePackage
+    depends_on('boxlib dims=3')
+    depends_on('chombo@3.2')
+    depends_on('hypre~internal-superlu')
+    depends_on('mesquite')
+#    depends_on('ml-trilinos')  # hoping for stripped down install of just ml
+#    depends_on('nox-trilinos')  # hoping for stripped down install of just nox
+    depends_on('moab')
+    depends_on('mpi')
+    depends_on('parpack')  # we need parpack ng
+    depends_on('petsc')
+    depends_on('phasta')
+    depends_on('pumi')
+    depends_on('sundials')
+    depends_on('superlu-dist')
+    depends_on('trilinos')
+    depends_on('zoltan')
+
+    # Dummy install for now,  will be removed when metapackage is available
+    def install(self, spec, prefix):
+        # Prevent the error message
+        #      ==> Error: Install failed for fastmath.  Nothing was installed!
+        #      ==> Error: Installation process had nonzero exit code : 256
+        with open(join_path(spec.prefix, 'bundle-package.txt'), 'w') as out:
+            out.write('This is a bundle\n')
+            out.close()
diff --git a/var/spack/repos/builtin/packages/mesquite/package.py b/var/spack/repos/builtin/packages/mesquite/package.py
new file mode 100644
index 0000000000..d67d8aaac4
--- /dev/null
+++ b/var/spack/repos/builtin/packages/mesquite/package.py
@@ -0,0 +1,56 @@
+##############################################################################
+# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/llnl/spack
+# Please also see the LICENSE file for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class Mesquite(AutotoolsPackage):
+    """Mesquite (Mesh Quality Improvement Toolkit) is designed to provide a
+       stand-alone, portable, comprehensive suite of mesh quality improvement
+       algorithms and components that can be used to construct custom quality
+       improvement algorithms. Mesquite provides a robust and effective mesh
+       improvement toolkit that allows both meshing researchers application
+       scientists to benefit from the latest developments in mesh quality
+       control and improvement."""
+
+    homepage = "https://software.sandia.gov/mesquite"
+    url      = "https://software.sandia.gov/mesquite/mesquite-2.3.0.tar.gz"
+
+    version('2.99',  '92b94167981bb8fcd59b0f0f18fbab64')
+    version('2.3.0', 'f64948b5210d5ccffaa9a2482447b322')
+    version('2.2.0', '41360c363e541aff7dc10024c90072d3')
+
+    variant('mpi', default=True, description='Enable MPI parallel support')
+
+    depends_on('mpi', when='+mpi')
+
+    def configure_args(self):
+        args = [
+            'CC=%s' % self.spec['mpi'].mpicc,
+            'CXX=%s' % self.spec['mpi'].mpicxx,
+            '--with-mpi=%s' % self.spec['mpi'].prefix,
+            '--enable-release',
+            '--enable-shared',
+        ]
+        return args
diff --git a/var/spack/repos/builtin/packages/moab/package.py b/var/spack/repos/builtin/packages/moab/package.py
index 14925cfd3e..bd864e0980 100644
--- a/var/spack/repos/builtin/packages/moab/package.py
+++ b/var/spack/repos/builtin/packages/moab/package.py
@@ -57,7 +57,9 @@ class Moab(Package):
 
     depends_on('mpi')
     depends_on('hdf5+mpi')
+    depends_on('netcdf', when='+netcdf')
     depends_on('netcdf+mpi', when='+netcdf')
+    depends_on('metis')
     depends_on('parmetis')
     depends_on('zoltan')
     depends_on('zoltan~fortran', when='~fortran')
@@ -67,13 +69,35 @@ class Moab(Package):
         options = [
             '--prefix=%s' % prefix,
             '--enable-optimize',
-            '--enable-tools',
+            '--disable-tools',
+            '--disable-mbconvert',
+            '--disable-hexmodops',
+            '--disable-vtkMOABReader',
+            '--disable-mbsize',
+            '--disable-mbskin',
+            '--disable-mbtagprop',
+            '--disable-mbmem',
+            '--disable-spheredecomp',
+            '--disable-mbsurfplot',
+            '--disable-mbpart',
+            '--disable-dagmc',
+            '--disable-gsets',
+            '--disable-mbmerge',
+            '--disable-mbdepth',
+            '--disable-mbcoupler',
+            '--disable-mcnpmit',
+            '--disable-refiner',
+            '--disable-h5mtools',
+            '--disable-mbcslam',
+            '--disable-mbquality',
+            '--disable-ahf',
+            '--disable-mbumr',
+            '--disable-imesh',
             '--with-pic',
             '--with-mpi=%s' % spec['mpi'].prefix,
             '--with-hdf5=%s' % spec['hdf5'].prefix,
             '--with-parmetis=%s' % spec['parmetis'].prefix,
             '--with-zoltan=%s' % spec['zoltan'].prefix,
-            '--disable-vtkMOABReader',
             '--without-vtk',
             'CXX=%s' % spec['mpi'].mpicxx,
             'CC=%s' % spec['mpi'].mpicc,
diff --git a/var/spack/repos/builtin/packages/phasta/package.py b/var/spack/repos/builtin/packages/phasta/package.py
new file mode 100644
index 0000000000..e5e794bcfa
--- /dev/null
+++ b/var/spack/repos/builtin/packages/phasta/package.py
@@ -0,0 +1,61 @@
+##############################################################################
+# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/llnl/spack
+# Please also see the LICENSE file for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class Phasta(CMakePackage):
+    """SCOREC RPI's Parallel Hierarchic Adaptive Stabilized Transient Analysis
+       (PHASTA) of compressible and incompressible Navier Stokes equations."""
+
+    homepage = "https://www.scorec.rpi.edu/software.php"
+    url      = "https://github.com/PHASTA/phasta.git"
+
+    version('0.0.1', git='https://github.com/PHASTA/phasta.git',
+        commit='11f431f2d1a53a529dab4b0f079ab8aab7ca1109')
+    version('develop', git='https://github.com/PHASTA/phasta.git',
+        branch='master')
+
+    depends_on('mpi')
+
+    def cmake_args(self):
+        spec = self.spec
+
+        args = [
+            '-DPHASTA_USE_MPI=ON',
+            '-DPHASTA_BUILD_CONVERTERIO=OFF',
+            '-DPHASTA_BUILD_ACUSTAT=OFF',
+            '-DPHASTA_BUILD_M2N=OFF',
+            '-DPHASTA_BUILD_M2NFixBnd=OFF',
+            '-DPHASTA_USE_LESLIB=OFF',
+            '-DPHASTA_USE_PETSC=OFF',
+            '-DPHASTA_USE_SVLS=ON',
+            '-DPHASTA_INCOMPRESSIBLE=ON',
+            '-DPHASTA_COMPRESSIBLE=ON',
+            '-DCMAKE_C_COMPILER=%s' % spec['mpi'].mpicc,
+            '-DCMAKE_CXX_COMPILER=%s' % spec['mpi'].mpicxx,
+            '-DCMAKE_Fortran_COMPILER=%s' % spec['mpi'].mpifc,
+        ]
+
+        return args
diff --git a/var/spack/repos/builtin/packages/pumi/package.py b/var/spack/repos/builtin/packages/pumi/package.py
new file mode 100644
index 0000000000..40d37c6ce6
--- /dev/null
+++ b/var/spack/repos/builtin/packages/pumi/package.py
@@ -0,0 +1,65 @@
+##############################################################################
+# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/llnl/spack
+# Please also see the LICENSE file for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+import sys
+
+
+class Pumi(CMakePackage):
+    """SCOREC RPI's Parallel Unstructured Mesh Infrastructure (PUMI).
+       An efficient distributed mesh data structure and methods to support
+       parallel adaptive analysis including general mesh-based operations,
+       such as mesh entity creation/deletion, adjacency and geometric
+       classification, iterators, arbitrary (field) data attachable to mesh
+       entities, efficient communication involving entities duplicated
+       across multiple tasks, migration of mesh entities between tasks,
+       and dynamic load balancing."""
+
+    homepage = "https://www.scorec.rpi.edu/pumi"
+    url      = "https://github.com/SCOREC/core.git"
+
+    version('0.0.1', git='https://github.com/SCOREC/core.git',
+        commit='0c315e82b3f2478dc18bdd6cfa89f1cddb85cd6a')
+    version('develop', git='https://github.com/SCOREC/core.git',
+        branch='master')
+
+    if sys.platform == 'darwin':
+        patch('phiotimer.cc.darwin.patch', level=0)  # !clock_gettime
+
+    variant('zoltan', default=False, description='Enable Zoltan Features')
+
+    depends_on('mpi')
+    depends_on('zoltan', when='+zoltan')
+
+    def cmake_args(self):
+        spec = self.spec
+
+        args = [
+            '-DSCOREC_CXX_WARNINGS=OFF',
+            '-DENABLE_ZOLTAN=%s' % ('ON' if '+zoltan' in spec else 'OFF'),
+            '-DCMAKE_C_COMPILER=%s' % spec['mpi'].mpicc,
+            '-DCMAKE_CXX_COMPILER=%s' % spec['mpi'].mpicxx,
+        ]
+
+        return args
diff --git a/var/spack/repos/builtin/packages/pumi/phiotimer.cc.darwin.patch b/var/spack/repos/builtin/packages/pumi/phiotimer.cc.darwin.patch
new file mode 100644
index 0000000000..52c6e63fca
--- /dev/null
+++ b/var/spack/repos/builtin/packages/pumi/phiotimer.cc.darwin.patch
@@ -0,0 +1,21 @@
+*** ./phasta/phiotimer.cc	2017-05-03 12:26:25.000000000 -0700
+--- ./phasta/phiotimer.cc.patched	2017-05-03 12:26:11.000000000 -0700
+***************
+*** 56,63 ****
+  }
+  #else
+  void phastaio_time(phastaioTime* t) {
+!   int err;
+!   err = clock_gettime(CLOCK_MONOTONIC,t);
+    PCU_ALWAYS_ASSERT(!err);
+  }
+  /*return elapsed time in micro seconds*/
+--- 56,63 ----
+  }
+  #else
+  void phastaio_time(phastaioTime* t) {
+!   int err=0;
+!   /*err = clock_gettime(CLOCK_MONOTONIC,t);*/
+    PCU_ALWAYS_ASSERT(!err);
+  }
+  /*return elapsed time in micro seconds*/