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| author | Audrey Thoma <las_thoma15@iastate.edu> | 2017-07-24 15:50:32 -0500 |
|---|---|---|
| committer | Adam J. Stewart <ajstewart426@gmail.com> | 2017-07-24 15:50:32 -0500 |
| commit | bd0699b02684cca0341c5899b4e72edd021f055c (patch) | |
| tree | 711dfcf6dd2a46367849575f68be2449aebdff43 /var | |
| parent | 250ee413e9f37e36e91ccc5ffec8fb294faf1620 (diff) | |
| download | spack-bd0699b02684cca0341c5899b4e72edd021f055c.tar.gz spack-bd0699b02684cca0341c5899b4e72edd021f055c.tar.bz2 spack-bd0699b02684cca0341c5899b4e72edd021f055c.tar.xz spack-bd0699b02684cca0341c5899b4e72edd021f055c.zip | |
stringtie: new package (#4878)
Diffstat (limited to 'var')
| -rw-r--r-- | var/spack/repos/builtin/packages/stringtie/package.py | 41 |
1 files changed, 41 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/stringtie/package.py b/var/spack/repos/builtin/packages/stringtie/package.py new file mode 100644 index 0000000000..9baf545a4c --- /dev/null +++ b/var/spack/repos/builtin/packages/stringtie/package.py @@ -0,0 +1,41 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class Stringtie(MakefilePackage): + """StringTie is a fast and highly efficient assembler of RNA-Seq alignments + into potential transcripts.""" + + homepage = "https://ccb.jhu.edu/software/stringtie" + url = "https://github.com/gpertea/stringtie/archive/v1.3.3b.tar.gz" + + version('1.3.3b', '11a43260b18e4272182380e922445d88') + + depends_on('samtools') + + def install(self, spec, prefix): + mkdirp(prefix.bin) + install('stringtie', prefix.bin) |