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authorJustin S <3630356+codeandkey@users.noreply.github.com>2020-01-06 16:21:38 -0600
committerAdam J. Stewart <ajstewart426@gmail.com>2020-01-06 16:21:38 -0600
commite49a5adf043d82a35a43b64b91b45ba4861e0825 (patch)
tree5f21ba4c37275b394e914a562f557f217dddc1d0 /var
parente04a9031b0493845bf40fe046eceab412f14d91e (diff)
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r-snpstats: new package at 1.34.0 (#14404)
Diffstat (limited to 'var')
-rw-r--r--var/spack/repos/builtin/packages/r-snpstats/package.py29
1 files changed, 29 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/r-snpstats/package.py b/var/spack/repos/builtin/packages/r-snpstats/package.py
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+++ b/var/spack/repos/builtin/packages/r-snpstats/package.py
@@ -0,0 +1,29 @@
+# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+from spack import *
+
+
+class RSnpstats(RPackage):
+ """SnpMatrix and XSnpMatrix classes and methods.
+
+ Classes and statistical methods for large SNP association studies. This
+ extends the earlier snpMatrix package, allowing for uncertainty in
+ genotypes."""
+
+ homepage = "https://bioconductor.org/packages/snpStats"
+ git = "https://git.bioconductor.org/packages/snpStats.git"
+
+ version('1.34.0', commit='e31cdfb18a9e12d70d6a3e8e6fbf7cf8faa3ea5b')
+ version('1.32.0', commit='7c31158183b4e39da6dc30c7da275acc36b2e32f')
+ version('1.30.0', commit='0dc1e4246f015feaf2579d60268b10ab5149ce09')
+ version('1.28.0', commit='8df9f4188f720dfbb4f4f4ec255cd2e22f3f4426')
+ version('1.26.0', commit='7c9b3304073e0556d694a8531882b349822fdda8')
+
+ depends_on('r@2.10.0:', type=('build', 'run'))
+ depends_on('r-survival', type=('build', 'run'))
+ depends_on('r-matrix', type=('build', 'run'))
+ depends_on('r-biocgenerics', type=('build', 'run'))
+ depends_on('r-zlibbioc', type=('build', 'run'))