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| author | George Hartzell <hartzell@alerce.com> | 2016-09-21 04:23:03 -0700 |
|---|---|---|
| committer | Todd Gamblin <tgamblin@llnl.gov> | 2016-09-21 04:23:03 -0700 |
| commit | 51d869493ab85d4972e2d9f35be95e1b1c48dae9 (patch) | |
| tree | 2476063b7edad22bb84924296f0576587e3987ae /var | |
| parent | db0baaafe358a22b5bdfcf340b65ad23f9047176 (diff) | |
| download | spack-51d869493ab85d4972e2d9f35be95e1b1c48dae9.tar.gz spack-51d869493ab85d4972e2d9f35be95e1b1c48dae9.tar.bz2 spack-51d869493ab85d4972e2d9f35be95e1b1c48dae9.tar.xz spack-51d869493ab85d4972e2d9f35be95e1b1c48dae9.zip | |
Add package for bedtools2 (#1572)
Add package for bedtools2, with support for v2.25.0 and v2.26.0.
Diffstat (limited to 'var')
| -rw-r--r-- | var/spack/repos/builtin/packages/bedtools2/package.py | 43 |
1 files changed, 43 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/bedtools2/package.py b/var/spack/repos/builtin/packages/bedtools2/package.py new file mode 100644 index 0000000000..46f3185154 --- /dev/null +++ b/var/spack/repos/builtin/packages/bedtools2/package.py @@ -0,0 +1,43 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class Bedtools2(Package): + """Collectively, the bedtools utilities are a swiss-army knife of + tools for a wide-range of genomics analysis tasks. The most + widely-used tools enable genome arithmetic: that is, set theory + on the genome.""" + + homepage = "https://github.com/arq5x/bedtools2" + url = "https://github.com/arq5x/bedtools2/archive/v2.26.0.tar.gz" + + version('2.26.0', '52227e7efa6627f0f95d7d734973233d') + version('2.25.0', '534fb4a7bf0d0c3f05be52a0160d8e3d') + + depends_on('zlib') + + def install(self, spec, prefix): + make("prefix=%s" % prefix, "install") |