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| author | xfzhao <xfzhao@iastate.edu> | 2019-09-09 12:55:06 -0500 |
|---|---|---|
| committer | Adam J. Stewart <ajstewart426@gmail.com> | 2019-09-09 12:55:06 -0500 |
| commit | c30f9c683388f4610251afcc50c203a14f299399 (patch) | |
| tree | 9bc6979620ea7ff4cc0ce2c20783cd067a6ac220 /var | |
| parent | 62f0286f5e2ecf63f6f18c28b12844eee18277f7 (diff) | |
| download | spack-c30f9c683388f4610251afcc50c203a14f299399.tar.gz spack-c30f9c683388f4610251afcc50c203a14f299399.tar.bz2 spack-c30f9c683388f4610251afcc50c203a14f299399.tar.xz spack-c30f9c683388f4610251afcc50c203a14f299399.zip | |
update bbmap (#12721)
* update bbmap
* remove one extra comment line
Diffstat (limited to 'var')
| -rw-r--r-- | var/spack/repos/builtin/packages/bbmap/package.py | 7 |
1 files changed, 6 insertions, 1 deletions
diff --git a/var/spack/repos/builtin/packages/bbmap/package.py b/var/spack/repos/builtin/packages/bbmap/package.py index fd85b419cf..e232e9f395 100644 --- a/var/spack/repos/builtin/packages/bbmap/package.py +++ b/var/spack/repos/builtin/packages/bbmap/package.py @@ -10,11 +10,16 @@ class Bbmap(Package): """Short read aligner for DNA and RNA-seq data.""" homepage = "http://sourceforge.net/projects/bbmap/" - url = "https://downloads.sourceforge.net/project/bbmap/BBMap_37.36.tar.gz" + url = "https://downloads.sourceforge.net/project/bbmap/BBMap_38.63.tar.gz" + version('38.63', sha256='089064104526c8d696164aefa067f935b888bc71ef95527c72a98c17ee90a01f') version('37.36', '1e1086e1fae490a7d03c5a065b1c262f') depends_on('java') def install(self, spec, prefix): install_tree('.', prefix.bin) + + def setup_environment(self, spack_env, run_env): + run_env.set('BBMAP_CONFIG', self.prefix.bin.config) + run_env.set('BBMAP_RESOURCES', self.prefix.bin.resources) |