added a new package file for PHIST (Pipelined, Hybrid-parallel Iterat… (#7361)

* added a new package file for PHIST (Pipelined, Hybrid-parallel Iterative Solver Toolkit)

* packages/phist: fix some formatting errors (too long lines etc)
and set allowed values for option "outlev"

* packages/phist: fix some more flake8 errors

* add headers  property to netlib-lapack and intel-mkl

* ghost: fix finding cblas header and libs (at least for mkl and netlib-lapack, which provide headers())

* added a new package file for PHIST (Pipelined, Hybrid-parallel Iterative Solver Toolkit)

* packages/phist: fix some formatting errors (too long lines etc)
and set allowed values for option "outlev"

* packages/phist: fix some more flake8 errors

* phist: use headers property to find lapacke include dir

* phist: fix flake8 error

* phist: be more specific about dependencies and update version

* phist: state trilinos minimum version when building with Tpetra kernels

* gmp: add oldish version 5.1.3 with checksum

* phist: get rid of the 'petsc+complex' variant, it can be installed by kernel_lib=petsc ^petsc+complex

* phist: new version

* phist: fix version checksum

* Revert "add headers  property to netlib-lapack and intel-mkl"

This reverts commit d8cb62905ebfb2cba186fd2d736d54a88a49d089.

* Revert "ghost: fix finding cblas header and libs (at least for mkl and netlib-lapack, which provide headers())"

This reverts commit d406a77ed7879c124fbaf1d757d002b9f0771620.

* phist: remove unused function

* phist: reorder package file versions/variants/depends_on/rest

* phist: some minor changes requested by @adamjsteward

1 files changed, 132 insertions, 0 deletions

diff --git a/var/spack/repos/builtin/packages/phist/package.py b/var/spack/repos/builtin/packages/phist/package.py
new file mode 100644
index 0000000000..d224be372f
--- /dev/null
+++ b/var/spack/repos/builtin/packages/phist/package.py
@@ -0,0 +1,132 @@
+##############################################################################
+# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/spack/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+
+from spack import *
+
+
+class Phist(CMakePackage):
+    """The Pipelined, Hybrid-parallel Iterative Solver Toolkit provides
+    implementations of and interfaces to block iterative solvers for sparse
+    linear and eigenvalue problems. In contrast to other libraries we support
+    multiple backends (e.g. Trilinos, PETSc and our own optimized kernels),
+    and interfaces in multiple languages such as C, C++, Fortran 2003 and
+    Python. PHIST has a clear focus on portability and hardware performance:
+    in particular support row-major storage of block vectors and using GPUs
+    (via the ghost library or Trilinos/Tpetra).
+    """
+
+    homepage = "https://bitbucket.org/essex/phist/"
+    url = 'https://bitbucket.org/essex/phist/get/phist-1.4.3.tar.gz'
+
+    version('develop',
+            git='https://bitbucket.org/essex/phist/phist.git', branch='devel')
+    version('master',
+            git='https://bitbucket.org/essex/phist/phist.git', branch='master')
+    version('1.4.3', 'af3300378d4282366d148e38c3a3199a')
+
+    variant(name='kernel_lib', default='builtin',
+            description='select the kernel library (backend) for phist',
+            values=['builtin',
+                    'epetra',
+                    'tpetra',
+                    'petsc',
+                    'eigen',
+                    'ghost'])
+    variant(name='outlev', default='2', values=['0', '1', '2', '3', '4', '5'],
+            description='verbosity. 0: errors 1: +warnings 2: +info '
+                        '3: +verbose 4: +extreme 5; +debug')
+
+    variant('shared',  default=True,
+            description='Enables the build of shared libraries')
+
+    variant('mpi', default=True,
+            description='enable/disable MPI (note that the kernel library may '
+            'not support this choice)')
+    variant('parmetis', default=False,
+            description='enable/disable ParMETIS partitioning (only actually '
+                        'used with kernel_lib=builtin)')
+    variant('trilinos', default=False,
+            description='enable/disable Trilinos third-party libraries. '
+                        'For all kernel_libs, we can use Belos and Anasazi '
+                        'iterative solvers. For the Trilinos backends '
+                        '(kernel_lib=epetra|tpetra) we can use preconditioner '
+                        'packages such as Ifpack, Ifpack2 and ML.')
+
+    # ###################### Dependencies ##########################
+
+    depends_on('cmake@3.8:', type='build')
+    depends_on('blas')
+    depends_on('lapack')
+    depends_on('mpi', when='+mpi')
+    depends_on('trilinos+anasazi+belos+teuchos', when='+trilinos')
+    depends_on('trilinos@12:+tpetra', when='kernel_lib=tpetra')
+    # Epetra backend also works with older Trilinos versions
+    depends_on('trilinos+epetra', when='kernel_lib=epetra')
+    depends_on('petsc', when='kernel_lib=petsc')
+    depends_on('eigen', when='kernel_lib=eigen')
+    depends_on('ghost', when='kernel_lib=ghost')
+
+    depends_on('trilinos', when='+trilinos')
+    depends_on('parmetis ^metis+int64', when='+parmetis')
+
+    def cmake_args(self):
+        spec = self.spec
+
+        kernel_lib = spec.variants['kernel_lib'].value
+        outlev = spec.variants['outlev'].value
+
+        lapacke_libs = \
+            (spec['lapack:c'].libs + spec['blas:c'].libs).joined(';')
+        lapacke_include_dir = spec['lapack:c'].headers.directories[0]
+
+        args = ['-DPHIST_KERNEL_LIB=%s' % kernel_lib,
+                '-DPHIST_OUTLEV=%s' % outlev,
+                '-DTPL_LAPACKE_LIBRARIES=%s' % lapacke_libs,
+                '-DTPL_LAPACKE_INCLUDE_DIRS=%s' % lapacke_include_dir,
+                '-DPHIST_ENABLE_MPI:BOOL=%s'
+                % ('ON' if '+mpi' in spec else 'OFF'),
+                '-DBUILD_SHARED_LIBS:BOOL=%s'
+                % ('ON' if '+shared' in spec else 'OFF'),
+                '-DPHIST_USE_TRILINOS_TPLS:BOOL=%s'
+                % ('ON' if '+trilinos' in spec else 'OFF'),
+                '-DPHIST_USE_SOLVER_TPLS:BOOL=%s'
+                % ('ON' if '+trilinos' in spec else 'OFF'),
+                '-DPHIST_USE_PRECON_TPLS:BOOL=%s'
+                % ('ON' if '+trilinos' in spec else 'OFF'),
+                ]
+
+        return args
+
+    @run_after('build')
+    @on_package_attributes(run_tests=True)
+    def check(self):
+        with working_dir(self.build_directory):
+            make("check")
+
+    @run_after('install')
+    @on_package_attributes(run_tests=True)
+    def test_install(self):
+        with working_dir(self.build_directory):
+            make("test_install")