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| author | Douglas Duckworth <quackmaster@protonmail.com> | 2017-05-27 16:02:39 -0400 |
|---|---|---|
| committer | Adam J. Stewart <ajstewart426@gmail.com> | 2017-05-27 15:02:39 -0500 |
| commit | f14041d6c1902ea18d74690374074a8d0d256ffe (patch) | |
| tree | a8bd49ad9dbd54a5c7b6414dafb967d0fe3520d3 /var | |
| parent | 50e729173ba49f0c95ae98266caca16b119f481a (diff) | |
| download | spack-f14041d6c1902ea18d74690374074a8d0d256ffe.tar.gz spack-f14041d6c1902ea18d74690374074a8d0d256ffe.tar.bz2 spack-f14041d6c1902ea18d74690374074a8d0d256ffe.tar.xz spack-f14041d6c1902ea18d74690374074a8d0d256ffe.zip | |
added STAR aligner package (#4368)
* added STAR aligner package
* fixed flake errors
* PATH NOW WORKS
* STAR install now works
* star install now perfected
Diffstat (limited to 'var')
| -rw-r--r-- | var/spack/repos/builtin/packages/star/package.py | 41 |
1 files changed, 41 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/star/package.py b/var/spack/repos/builtin/packages/star/package.py new file mode 100644 index 0000000000..87c30733e4 --- /dev/null +++ b/var/spack/repos/builtin/packages/star/package.py @@ -0,0 +1,41 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class Star(Package): + """STAR is an ultrafast universal RNA-seq aligner.""" + + homepage = "https://github.com/alexdobin/STAR" + url = "https://github.com/alexdobin/STAR/archive/2.5.3a.tar.gz" + + version('2.5.3a', 'baf8d1b62a50482cfa13acb7652dc391') + + def install(self, spec, prefix): + with working_dir('source'): + make('STAR', 'STARlong') + mkdirp(prefix.bin) + install('STAR', prefix.bin) + install('STARlong', prefix.bin) |