diff options
| author | Yifan Zhu <ifanzhu@foxmail.com> | 2018-05-07 17:23:45 -0500 |
|---|---|---|
| committer | Adam J. Stewart <ajstewart426@gmail.com> | 2018-05-07 17:23:45 -0500 |
| commit | 3a5f68c07876ea06d0df9c4dedb3d23c2c22fd71 (patch) | |
| tree | 55455882c8a7445527e0add4cfba6b1c0aef98cf /var | |
| parent | d6c6a7016f0a65cf7c9f9fa447f1d46fc9c240b7 (diff) | |
| download | spack-3a5f68c07876ea06d0df9c4dedb3d23c2c22fd71.tar.gz spack-3a5f68c07876ea06d0df9c4dedb3d23c2c22fd71.tar.bz2 spack-3a5f68c07876ea06d0df9c4dedb3d23c2c22fd71.tar.xz spack-3a5f68c07876ea06d0df9c4dedb3d23c2c22fd71.zip | |
r-genie3: new package (#8044)
Diffstat (limited to 'var')
| -rw-r--r-- | var/spack/repos/builtin/packages/r-genie3/package.py | 38 |
1 files changed, 38 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/r-genie3/package.py b/var/spack/repos/builtin/packages/r-genie3/package.py new file mode 100644 index 0000000000..49dc72debc --- /dev/null +++ b/var/spack/repos/builtin/packages/r-genie3/package.py @@ -0,0 +1,38 @@ +############################################################################## +# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/spack/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class RGenie3(RPackage): + """This package implements the GENIE3 algorithm for inferring gene + regulatory networks from expression data.""" + + homepage = "https://bioconductor.org/packages/GENIE3/" + + version('1.2.0', git='https://git.bioconductor.org/packages/GENIE3', + commit='cafe6a1a85095cda6cc3c812eb6f53501fcbaf93') + + depends_on('r-reshape2', type=('build', 'run')) + depends_on('r@3.5.0:', when='@1.2.0') |