added new package - MotionCor2 (#6151)

1 files changed, 50 insertions, 0 deletions

diff --git a/var/spack/repos/builtin/packages/motioncor2/package.py b/var/spack/repos/builtin/packages/motioncor2/package.py
new file mode 100644
index 0000000000..304e369d99
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+++ b/var/spack/repos/builtin/packages/motioncor2/package.py
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+##############################################################################
+# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/spack/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+from glob import glob
+
+
+class Motioncor2(Package):
+    """MotionCor2 is a multi-GPU program that corrects beam-induced sample
+    motion recorded on dose fractionated movie stacks. It implements a robust
+    iterative alignment algorithm that delivers precise measurement and
+    correction of both global and non-uniform local motions at
+    single pixel level, suitable for both single-particle and
+    tomographic images. MotionCor2 is sufficiently fast
+    to keep up with automated data collection."""
+
+    homepage = "http://msg.ucsf.edu/em/software"
+    url      = "http://msg.ucsf.edu/MotionCor2/MotionCor2-1.0.2.tar.gz"
+
+    version('1.0.2',        'f2f4c5b09170ab8480ca657f14cdba2b')
+    version('1.0.1',        '73d94a80abdef9bf37bbc80fbbe76622')
+    version('1.0.0',        '490f4df8daa9f5ddb9eec3962ba3ddf5')
+
+    depends_on('cuda@8.0:8.99', type='run')
+
+    def install(self, spec, prefix):
+        mkdirp(prefix.bin)
+        for files in glob("MotionCor2_*"):
+            install(files, prefix.bin)