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authorYifan Zhu <ifanzhu@foxmail.com>2017-11-08 14:58:43 -0600
committerChristoph Junghans <christoph.junghans@gmail.com>2017-11-08 13:58:43 -0700
commit5f70d578ec27b3eccb1becec913dc7785fcf8ba1 (patch)
treec6682baa067c700f36ef5ced09e78238dd89dbaa /var
parent860834e094e55f607c79a86ad786067a1dfe1d8f (diff)
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r-maldiquant: created new package (#6188)
Diffstat (limited to 'var')
-rw-r--r--var/spack/repos/builtin/packages/r-maldiquant/package.py46
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diff --git a/var/spack/repos/builtin/packages/r-maldiquant/package.py b/var/spack/repos/builtin/packages/r-maldiquant/package.py
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+##############################################################################
+# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/spack/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class RMaldiquant(RPackage):
+ """A complete analysis pipeline for matrix-assisted laser
+ desorption/ionization-time-of-flight (MALDI-TOF) and other
+ two-dimensional mass spectrometry data. In addition to commonly used
+ plotting and processing methods it includes distinctive features,
+ namely baseline subtraction methods such as morphological filters
+ (TopHat) or the statistics-sensitive non-linear iterative peak-clipping
+ algorithm (SNIP), peak alignment using warping functions, handling of
+ replicated measurements as well as allowing spectra with different
+ resolutions."""
+
+ homepage = "https://cran.r-project.org/package=MALDIquant"
+ url = "https://cran.r-project.org/src/contrib/MALDIquant_1.16.4.tar.gz"
+ list_url = "https://cran.r-project.org/src/contrib/Archive/MALDIquant"
+
+ version('1.16.4', '83200e7496d05c5a99292e45d2b11c67')
+
+ depends_on('r-knitr', type=('build', 'run'))
+ depends_on('r-testthat', type=('build', 'run'))