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| author | Audrey Thoma <las_thoma15@iastate.edu> | 2017-08-09 18:50:11 -0500 |
|---|---|---|
| committer | Adam J. Stewart <ajstewart426@gmail.com> | 2017-08-09 18:50:11 -0500 |
| commit | 869d40648f62c0864c8336153b568fd388d11253 (patch) | |
| tree | a91c1cab9b063a469e9af4ded4fe0464db5f6898 /var | |
| parent | 3edf36b0a4a2a50a7968e96dd12634cd25bdb567 (diff) | |
| download | spack-869d40648f62c0864c8336153b568fd388d11253.tar.gz spack-869d40648f62c0864c8336153b568fd388d11253.tar.bz2 spack-869d40648f62c0864c8336153b568fd388d11253.tar.xz spack-869d40648f62c0864c8336153b568fd388d11253.zip | |
soap2: new package (#5045)
Diffstat (limited to 'var')
| -rw-r--r-- | var/spack/repos/builtin/packages/soap2/package.py | 42 |
1 files changed, 42 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/soap2/package.py b/var/spack/repos/builtin/packages/soap2/package.py new file mode 100644 index 0000000000..5853bdf1e6 --- /dev/null +++ b/var/spack/repos/builtin/packages/soap2/package.py @@ -0,0 +1,42 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class Soap2(Package): + """Software for short oligonucleotide alignment.""" + + homepage = "http://soap.genomics.org.cn/soapaligner.html" + url = "http://soap.genomics.org.cn/down/soap2.21release.tar.gz" + + version('2.21', '563b8b7235463b68413f9e841aa40779') + + def install(self, spec, prefix): + mkdirp(prefix.bin) + mkdirp(prefix.share.man) + install('soap', prefix.bin) + install('2bwt-builder', prefix.bin) + install('soap.1', prefix.share.man) + install('soap.man', prefix.share.man) |