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author健美猫 <weijianwen@gmail.com>2018-05-05 11:11:26 +0800
committerAdam J. Stewart <ajstewart426@gmail.com>2018-05-04 22:11:26 -0500
commitdfe0752807783099d9bb7c5ae7d21a9b1ed155fc (patch)
tree4c24df82bf04a720acf7e3096d2fe9792333d2d3 /var
parent4fe6d9aceea5fefd8cc9779228c3a0671fed79d5 (diff)
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Bump pysam to 0.14.1. (#7988)
* py-pysam requires curl. * py-pysam conflicts with htslib@1.7. * Bump py-pysam versions. * Add more dependencies.
Diffstat (limited to 'var')
-rw-r--r--var/spack/repos/builtin/packages/py-pysam/package.py8
1 files changed, 7 insertions, 1 deletions
diff --git a/var/spack/repos/builtin/packages/py-pysam/package.py b/var/spack/repos/builtin/packages/py-pysam/package.py
index 8b98f5a4e8..945855947b 100644
--- a/var/spack/repos/builtin/packages/py-pysam/package.py
+++ b/var/spack/repos/builtin/packages/py-pysam/package.py
@@ -30,12 +30,18 @@ class PyPysam(PythonPackage):
sets."""
homepage = "https://pypi.python.org/pypi/pysam"
- url = "https://pypi.io/packages/source/p/pysam/pysam-0.11.2.2.tar.gz"
+ url = "https://github.com/pysam-developers/pysam/archive/v0.14.1.tar.gz"
+ version('0.14.1', 'ad88fa5bbcc0fdf4a936734691d9c9d1')
version('0.13', 'a9b502dd1a7e6403e35e6972211688a2')
version('0.11.2.2', '56230cd5f55b503845915b76c22d620a')
version('0.7.7', 'eaf9f37cbccc5e2708754d045909c1a0')
depends_on('py-setuptools', type='build')
depends_on('py-cython@0.21:', type='build')
+ depends_on('curl')
depends_on('bcftools')
+ depends_on('htslib')
+ depends_on('samtools')
+
+ depends_on('htslib@:1.6', when='@:0.13')