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authorAudrey Thoma <las_thoma15@iastate.edu>2017-08-10 17:51:46 -0500
committerAdam J. Stewart <ajstewart426@gmail.com>2017-08-10 17:51:46 -0500
commite99834df6abb0e5f256db9a84b6d6e4ba5d5bb18 (patch)
treefe2984577d55095a2aeb1caa773efdeb98765ca4 /var
parent887e4724c2f200caee11be762c5b2216c4dedefb (diff)
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fastphase: new package (#5059)
Diffstat (limited to 'var')
-rw-r--r--var/spack/repos/builtin/packages/fastphase/package.py39
1 files changed, 39 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/fastphase/package.py b/var/spack/repos/builtin/packages/fastphase/package.py
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+++ b/var/spack/repos/builtin/packages/fastphase/package.py
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+##############################################################################
+# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/llnl/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class Fastphase(Package):
+ """Software for haplotype reconstruction, and estimating missing genotypes
+ from population data."""
+
+ homepage = "http://stephenslab.uchicago.edu/software.html"
+ url = "http://scheet.org/code/Linuxfp.tar.gz"
+
+ version('2016-03-30', 'b48731eed9b8d0a5a321f970c5c20d8c')
+
+ def install(self, spec, prefix):
+ mkdirp(prefix.bin)
+ install('fastPHASE', prefix.bin)