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| author | Eric Martin <erimar77@users.noreply.github.com> | 2019-03-06 20:58:50 -0600 |
|---|---|---|
| committer | Peter Scheibel <scheibel1@llnl.gov> | 2019-03-06 20:58:50 -0600 |
| commit | efdeb860d120a8bbf639d80eb179bcccddc4ff44 (patch) | |
| tree | fc5ae1df1b840d56976c5aebd7fa4e7fa4534629 /var | |
| parent | 45856c3660b1eebd13db3c8c11e218ac1ab3b953 (diff) | |
| download | spack-efdeb860d120a8bbf639d80eb179bcccddc4ff44.tar.gz spack-efdeb860d120a8bbf639d80eb179bcccddc4ff44.tar.bz2 spack-efdeb860d120a8bbf639d80eb179bcccddc4ff44.tar.xz spack-efdeb860d120a8bbf639d80eb179bcccddc4ff44.zip | |
transdecoder package: Add version 5.5.0 and fix up url and installation paths (#10745)
* Add version 5.5.0 and fix installation locations
* URL format has changed as of version 5.5.0
* Update paths created for installation
Diffstat (limited to 'var')
| -rw-r--r-- | var/spack/repos/builtin/packages/transdecoder/package.py | 10 |
1 files changed, 6 insertions, 4 deletions
diff --git a/var/spack/repos/builtin/packages/transdecoder/package.py b/var/spack/repos/builtin/packages/transdecoder/package.py index d560404180..f3b3c92541 100644 --- a/var/spack/repos/builtin/packages/transdecoder/package.py +++ b/var/spack/repos/builtin/packages/transdecoder/package.py @@ -13,20 +13,22 @@ class Transdecoder(MakefilePackage): the genome using Tophat and Cufflinks.""" homepage = "http://transdecoder.github.io/" - url = "https://github.com/TransDecoder/TransDecoder/archive/v3.0.1.tar.gz" + url = "https://github.com/TransDecoder/TransDecoder/archive/TransDecoder-v5.5.0.tar.gz" - version('3.0.1', 'f62b86a15fcb78b1dada9f80cc25f300') + version('5.5.0', sha256='c800d9226350817471e9f51267c91f7cab99dbc9b26c980527fc1019e7d90a76') + version('3.0.1', 'f62b86a15fcb78b1dada9f80cc25f300', + url='https://github.com/TransDecoder/TransDecoder/archive/v3.0.1.tar.gz') depends_on('perl', type=('build', 'run')) depends_on('perl-uri-escape', type='run') def install(self, spec, prefix): - mkdirp(prefix.bin) + mkdirp(prefix.util) install('TransDecoder.LongOrfs', prefix) install('TransDecoder.Predict', prefix) install_tree('PerlLib', prefix.PerlLib) install_tree('util', prefix.util) def setup_environment(self, spack_env, run_env): - run_env.prepend_path('PATH', prefix.util.bin) run_env.prepend_path('PATH', prefix) + run_env.prepend_path('PATH', prefix.util) |