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authorJon Rood <jon.rood@nrel.gov>2018-07-02 10:42:09 -0600
committerAdam J. Stewart <ajstewart426@gmail.com>2018-07-02 11:42:09 -0500
commitf98657491de90a194fc4707d34e09abff2e6d580 (patch)
tree65499c8743ec2def0199b4396b340f231f100517 /var
parenta4ca2bb889fb65f9fdd2cbeca7d64fe8d5b27577 (diff)
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Add Amrvis package (#8590)
* First draft of amrvis package file. * More additions to amrvis. * Formatting. * Forcing compiler environment variables to point to spack mpi compilers when using mpi. * Disabling intel compiler for amrvis. * Comments. * Refining amrvis package file. * Moving library and include locations variables to be inserted at the first lines of the makefile. * Globbing amrvis binary instead of constructing its name. * Making env variable setting consistent and fixing globbing of executable. * Using iglob instead of glob. * Turning MPI on by default for Amrvis.
Diffstat (limited to 'var')
-rw-r--r--var/spack/repos/builtin/packages/amrvis/package.py188
1 files changed, 188 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/amrvis/package.py b/var/spack/repos/builtin/packages/amrvis/package.py
new file mode 100644
index 0000000000..b765c58a4b
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+++ b/var/spack/repos/builtin/packages/amrvis/package.py
@@ -0,0 +1,188 @@
+##############################################################################
+# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/spack/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999. #
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+import glob
+
+
+class Amrvis(MakefilePackage):
+ """Amrvis is a visualization package specifically designed to
+ read and display output and profiling data from codes built
+ on the AMReX framework.
+ """
+
+ homepage = "https://github.com/AMReX-Codes/Amrvis"
+ url = "https://github.com/AMReX-Codes/Amrvis.git"
+
+ version('master',
+ git='https://github.com/AMReX-Codes/Amrvis.git', tag='master')
+
+ variant(
+ 'dims',
+ default='3',
+ values=('1', '2', '3'),
+ multi=False,
+ description='Number of spatial dimensions'
+ )
+ variant(
+ 'prec',
+ default='DOUBLE',
+ values=('FLOAT', 'DOUBLE'),
+ multi=False,
+ description='Floating point precision'
+ )
+ variant('mpi', default=True, description='Enable MPI parallel support')
+ variant('debug', default=False, description='Enable debugging features')
+
+ depends_on('gmake', type='build')
+ depends_on('mpi', when='+mpi')
+ depends_on('libsm')
+ depends_on('libice')
+ depends_on('libxpm')
+ depends_on('libx11')
+ depends_on('libxt')
+ depends_on('libxext')
+ depends_on('motif')
+
+ # Only doing gcc and clang at the moment.
+ # Intel currently fails searching for mpiicc, mpiicpc, etc.
+ for comp in ['%intel', '%cce', '%nag', '%pgi', '%xl', '%xl_r']:
+ conflicts(
+ comp,
+ msg='Amrvis currently only builds with gcc and clang'
+ )
+
+ # Need to clone AMReX into Amrvis because Amrvis uses AMReX's source
+ resource(name='amrex',
+ git='https://github.com/AMReX-Codes/amrex.git',
+ tag='master',
+ placement='amrex')
+
+ def edit(self, spec, prefix):
+ # Set all available makefile options to values we want
+ makefile = FileFilter('GNUmakefile')
+ makefile.filter(
+ r'^AMREX_HOME\s*=.*',
+ 'AMREX_HOME = {0}'.format('./amrex')
+ )
+ makefile.filter(
+ r'^PRECISION\s*=.*',
+ 'PRECISION = {0}'.format(spec.variants['prec'].value)
+ )
+ makefile.filter(
+ r'^DIM\s*=.*',
+ 'DIM = {0}'.format(spec.variants['dims'].value)
+ )
+ makefile.filter(
+ r'^PROFILE\s*=.*',
+ 'PROFILE = FALSE'
+ )
+ makefile.filter(
+ r'^TRACE_PROFILE\s*=.*',
+ 'TRACE_PROFILE = FALSE'
+ )
+ makefile.filter(
+ r'^COMM_PROFILE\s*=.*',
+ 'COMM_PROFILE = FALSE'
+ )
+ makefile.filter(
+ r'^COMP\s*=.*',
+ 'COMP = {0}'.format(self.compiler.name)
+ )
+ makefile.filter(
+ r'^DEBUG\s*=.*',
+ 'DEBUG = {0}'.format(spec.variants['debug'].value).upper()
+ )
+ makefile.filter(
+ r'^USE_ARRAYVIEW\s*=.*',
+ 'USE_ARRAY_VIEW = FALSE'
+ )
+ makefile.filter(
+ r'^USE_MPI\s*=.*',
+ 'USE_MPI = {0}'.format(spec.variants['mpi'].value).upper()
+ )
+ makefile.filter(
+ r'^USE_CXX11\s*=.*',
+ 'USE_CXX11 = TRUE'
+ )
+ makefile.filter(
+ r'^USE_VOLRENDER\s*=.*',
+ 'USE_VOLRENDER = FALSE'
+ )
+ makefile.filter(
+ r'^USE_PARALLELVOLRENDER\s*=.*',
+ 'USE_PARALLELVOLRENDER = FALSE'
+ )
+ makefile.filter(
+ r'^USE_PROFPARSER\s*=.*',
+ 'USE_PROFPARSER = FALSE'
+ )
+
+ # A bit risky here deleting all /usr and /opt X
+ # library default search paths in makefile
+ makefile.filter(
+ r'^.*\b(usr|opt)\b.*$',
+ '# Spack removed INCLUDE_LOCATIONS and LIBRARY_LOCATIONS'
+ )
+
+ # Read GNUmakefile into array
+ with open('GNUmakefile', 'r') as file:
+ contents = file.readlines()
+
+ # Edit GNUmakefile includes and libraries to point to Spack
+ # dependencies.
+ # The safest bet is to put the LIBRARY_LOCATIONS and
+ # INCLUDE_LOCATIONS at the beginning of the makefile.
+ line_offset = 0
+ count = 0
+ for lib in ['libsm', 'libice', 'libxpm', 'libx11',
+ 'libxt', 'libxext', 'motif']:
+ contents.insert(
+ line_offset + count,
+ 'LIBRARY_LOCATIONS += {0}\n'.format(spec[lib].prefix.lib)
+ )
+ contents.insert(
+ line_offset + count + 1,
+ 'INCLUDE_LOCATIONS += {0}\n'.format(spec[lib].prefix.include)
+ )
+ count += 1
+
+ # Write GNUmakefile
+ with open('GNUmakefile', 'w') as file:
+ file.writelines(contents)
+
+ def setup_environment(self, spack_env, run_env):
+ # Help force Amrvis to not pick up random system compilers
+ if '+mpi' in self.spec:
+ spack_env.set('MPI_HOME', self.spec['mpi'].prefix)
+ spack_env.set('CC', spec['mpi'].mpicc)
+ spack_env.set('CXX', spec['mpi'].mpicxx)
+ spack_env.set('F77', spec['mpi'].mpif77)
+ spack_env.set('FC', spec['mpi'].mpifc)
+
+ def install(self, spec, prefix):
+ # Install exe manually
+ mkdirp(prefix.bin)
+ exes = glob.iglob('*.ex')
+ for exe in exes:
+ install(exe, prefix.bin)