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| author | snehring <snehring@users.noreply.github.com> | 2022-04-29 17:06:47 -0500 |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2022-04-29 16:06:47 -0600 |
| commit | 06b5217c019cf4c3e686eb14ca1a35c02e25d3ff (patch) | |
| tree | e945adee02639a5b6cf1e00e98a781cb2bc6b902 /var | |
| parent | 52bf7f41576d78d7f8bca0441e40428c047a0d6f (diff) | |
| download | spack-06b5217c019cf4c3e686eb14ca1a35c02e25d3ff.tar.gz spack-06b5217c019cf4c3e686eb14ca1a35c02e25d3ff.tar.bz2 spack-06b5217c019cf4c3e686eb14ca1a35c02e25d3ff.tar.xz spack-06b5217c019cf4c3e686eb14ca1a35c02e25d3ff.zip | |
hapcut2: adding new version 1.3.1 (#30383)
Diffstat (limited to 'var')
| -rw-r--r-- | var/spack/repos/builtin/packages/hapcut2/package.py | 24 |
1 files changed, 21 insertions, 3 deletions
diff --git a/var/spack/repos/builtin/packages/hapcut2/package.py b/var/spack/repos/builtin/packages/hapcut2/package.py index 81b354eacf..beae641608 100644 --- a/var/spack/repos/builtin/packages/hapcut2/package.py +++ b/var/spack/repos/builtin/packages/hapcut2/package.py @@ -13,15 +13,33 @@ class Hapcut2(MakefilePackage): homepage = "https://github.com/vibansal/HapCUT2" git = "https://github.com/vibansal/HapCUT2.git" + maintainers = ['snehring'] + version('v1.3.1', commit='c6481d5fd0618dc3e82b2eb8c2b4835d9a4f6da7') version('2017-07-10', commit='2966b94c2c2f97813b757d4999b7a6471df1160e', - submodules=True) + submodules=True, deprecated=True) - depends_on('zlib', type='link') + depends_on('htslib@1.3:') + depends_on('curl') + depends_on('openssl') + depends_on('xz') + depends_on('bzip2') + depends_on('zlib') + + @when('@v1.3.1:') + def edit(self, spec, prefix): + filter_file('CC=.*$', '', 'Makefile') + filter_file('CFLAGS=.*$', 'CFLAGS=-Wall -g -O3 -D_GNU_SOURCE', 'Makefile') + with working_dir('hairs-src'): + filter_file(r'(keyvalue\* keypointer;)', 'extern \\1', + 'hashtable.h') + filter_file(r'(keypointer = ht->blist\[hash\];)', 'keyvalue* \\1', + 'hashtable.c') def install(self, spec, prefix): mkdirp(prefix.bin) with working_dir('build'): - install('extractFOSMID', prefix.bin) + if self.spec.satisfies('@2017-07-10'): + install('extractFOSMID', prefix.bin) install('extractHAIRS', prefix.bin) install('HAPCUT2', prefix.bin) |