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| author | Erik Schnetter <schnetter@gmail.com> | 2015-12-21 13:18:35 -0500 |
|---|---|---|
| committer | Erik Schnetter <schnetter@gmail.com> | 2015-12-21 13:18:35 -0500 |
| commit | 611537eaed1a1e4d65d87184569b9723a1cf8128 (patch) | |
| tree | 2886eca4809a3e0e829d5029cb76c5570352f9ba /var | |
| parent | ba22fc8b78841728500966d471db7b5bfd26cf56 (diff) | |
| parent | d5e9279c1d40831f806ec6de87d0c447c55d4015 (diff) | |
| download | spack-611537eaed1a1e4d65d87184569b9723a1cf8128.tar.gz spack-611537eaed1a1e4d65d87184569b9723a1cf8128.tar.bz2 spack-611537eaed1a1e4d65d87184569b9723a1cf8128.tar.xz spack-611537eaed1a1e4d65d87184569b9723a1cf8128.zip | |
Merge branch 'develop' into correct-cc
Diffstat (limited to 'var')
34 files changed, 1693 insertions, 104 deletions
diff --git a/var/spack/packages/binutils/binutilskrell-2.24.patch b/var/spack/packages/binutils/binutilskrell-2.24.patch new file mode 100644 index 0000000000..f48291a6c9 --- /dev/null +++ b/var/spack/packages/binutils/binutilskrell-2.24.patch @@ -0,0 +1,52 @@ +--- binutils-2.24/libiberty/Makefile.in 2013-11-04 10:33:40.000000000 -0500 ++++ binutils-2.24-fixes/libiberty/Makefile.in 2014-10-17 16:22:31.413655000 -0400 +@@ -66,6 +66,7 @@ + MAKEOVERRIDES = + + TARGETLIB = ./libiberty.a ++TARGETLIBPIC = ./libiberty_pic.a + TESTLIB = ./testlib.a + + LIBOBJS = @LIBOBJS@ +@@ -355,27 +356,27 @@ + # since it will be passed the multilib flags. + MULTIOSDIR = `$(CC) $(CFLAGS) -print-multi-os-directory` + install_to_libdir: all +- if test -n "${target_header_dir}"; then \ +- ${mkinstalldirs} $(DESTDIR)$(libdir)/$(MULTIOSDIR); \ +- $(INSTALL_DATA) $(TARGETLIB) $(DESTDIR)$(libdir)/$(MULTIOSDIR)/$(TARGETLIB)n; \ +- ( cd $(DESTDIR)$(libdir)/$(MULTIOSDIR) ; chmod 644 $(TARGETLIB)n ;$(RANLIB) $(TARGETLIB)n ); \ +- mv -f $(DESTDIR)$(libdir)/$(MULTIOSDIR)/$(TARGETLIB)n $(DESTDIR)$(libdir)/$(MULTIOSDIR)/$(TARGETLIB); \ +- case "${target_header_dir}" in \ +- /*) thd=${target_header_dir};; \ +- *) thd=${includedir}/${target_header_dir};; \ +- esac; \ +- ${mkinstalldirs} $(DESTDIR)$${thd}; \ +- for h in ${INSTALLED_HEADERS}; do \ +- ${INSTALL_DATA} $$h $(DESTDIR)$${thd}; \ +- done; \ +- fi ++ ${mkinstalldirs} $(DESTDIR)$(libdir)/$(MULTIOSDIR); \ ++ $(INSTALL_DATA) $(TARGETLIB) $(DESTDIR)$(libdir)/$(MULTIOSDIR)/$(TARGETLIB)n; \ ++ $(INSTALL_DATA) pic/$(TARGETLIB) $(DESTDIR)$(libdir)/$(MULTIOSDIR)/$(TARGETLIBPIC)n; \ ++ ( cd $(DESTDIR)$(libdir)/$(MULTIOSDIR) ; chmod 644 $(TARGETLIB)n ;$(RANLIB) $(TARGETLIB)n ); \ ++ ( cd $(DESTDIR)$(libdir)/$(MULTIOSDIR) ; chmod 644 $(TARGETLIBPIC)n ;$(RANLIB) $(TARGETLIBPIC)n ); \ ++ mv -f $(DESTDIR)$(libdir)/$(MULTIOSDIR)/$(TARGETLIB)n $(DESTDIR)$(libdir)/$(MULTIOSDIR)/$(TARGETLIB); \ ++ mv -f $(DESTDIR)$(libdir)/$(MULTIOSDIR)/$(TARGETLIBPIC)n $(DESTDIR)$(libdir)/$(MULTIOSDIR)/$(TARGETLIBPIC); \ ++ ${mkinstalldirs} $(DESTDIR)$${includedir}; \ ++ for h in ${INSTALLED_HEADERS}; do \ ++ ${INSTALL_DATA} $$h $(DESTDIR)$${includedir}; \ ++ done; + @$(MULTIDO) $(FLAGS_TO_PASS) multi-do DO=install + + install_to_tooldir: all + ${mkinstalldirs} $(DESTDIR)$(tooldir)/lib/$(MULTIOSDIR) + $(INSTALL_DATA) $(TARGETLIB) $(DESTDIR)$(tooldir)/lib/$(MULTIOSDIR)/$(TARGETLIB)n ++ $(INSTALL_DATA) pic/$(TARGETLIB) $(DESTDIR)$(tooldir)/lib/$(MULTIOSDIR)/$(TARGETLIBPIC)n + ( cd $(DESTDIR)$(tooldir)/lib/$(MULTIOSDIR) ; chmod 644 $(TARGETLIB)n; $(RANLIB) $(TARGETLIB)n ) ++ ( cd $(DESTDIR)$(tooldir)/lib/$(MULTIOSDIR) ; chmod 644 $(TARGETLIBPIC)n; $(RANLIB) $(TARGETLIBPIC)n ) + mv -f $(DESTDIR)$(tooldir)/lib/$(MULTIOSDIR)/$(TARGETLIB)n $(DESTDIR)$(tooldir)/lib/$(MULTIOSDIR)/$(TARGETLIB) ++ mv -f $(DESTDIR)$(tooldir)/lib/$(MULTIOSDIR)/$(TARGETLIBPIC)n $(DESTDIR)$(tooldir)/lib/$(MULTIOSDIR)/$(TARGETLIBPIC) + @$(MULTIDO) $(FLAGS_TO_PASS) multi-do DO=install + + # required-list was used when building a shared bfd/opcodes/libiberty diff --git a/var/spack/packages/binutils/package.py b/var/spack/packages/binutils/package.py index be5a9b714b..123f4598f6 100644 --- a/var/spack/packages/binutils/package.py +++ b/var/spack/packages/binutils/package.py @@ -3,12 +3,15 @@ from spack import * class Binutils(Package): """GNU binutils, which contain the linker, assembler, objdump and others""" homepage = "http://www.gnu.org/software/binutils/" - url = "ftp://ftp.gnu.org/gnu/binutils/binutils-2.25.tar.bz2" - version('2.25', 'd9f3303f802a5b6b0bb73a335ab89d66') - version('2.24', 'e0f71a7b2ddab0f8612336ac81d9636b') - version('2.23.2', '4f8fa651e35ef262edc01d60fb45702e') - version('2.20.1', '2b9dc8f2b7dbd5ec5992c6e29de0b764') + version('2.25', 'd9f3303f802a5b6b0bb73a335ab89d66',url="ftp://ftp.gnu.org/gnu/binutils/binutils-2.25.tar.bz2") + version('2.24', 'e0f71a7b2ddab0f8612336ac81d9636b',url="ftp://ftp.gnu.org/gnu/binutils/binutils-2.24.tar.bz2") + version('2.23.2', '4f8fa651e35ef262edc01d60fb45702e',url="ftp://ftp.gnu.org/gnu/binutils/binutils-2.23.2.tar.bz2") + version('2.20.1', '2b9dc8f2b7dbd5ec5992c6e29de0b764',url="ftp://ftp.gnu.org/gnu/binutils/binutils-2.20.1.tar.bz2") + + # Add a patch that creates binutils libiberty_pic.a which is preferred by OpenSpeedShop and cbtf-krell + variant('krellpatch', default=False, description="build with openspeedshop based patch.") + patch('binutilskrell-2.24.patch', when='@2.24+krellpatch') variant('libiberty', default=False, description='Also install libiberty.') diff --git a/var/spack/packages/cbtf-argonavis/package.py b/var/spack/packages/cbtf-argonavis/package.py new file mode 100644 index 0000000000..7b07933911 --- /dev/null +++ b/var/spack/packages/cbtf-argonavis/package.py @@ -0,0 +1,66 @@ +################################################################################ +# Copyright (c) 2015 Krell Institute. All Rights Reserved. +# +# This program is free software; you can redistribute it and/or modify it under +# the terms of the GNU General Public License as published by the Free Software +# Foundation; either version 2 of the License, or (at your option) any later +# version. +# +# This program is distributed in the hope that it will be useful, but WITHOUT +# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS +# FOR A PARTICULAR PURPOSE. See the GNU General Public License for more +# details. +# +# You should have received a copy of the GNU General Public License along with +# this program; if not, write to the Free Software Foundation, Inc., 59 Temple +# Place, Suite 330, Boston, MA 02111-1307 USA +################################################################################ + +from spack import * + +class CbtfArgonavis(Package): + """CBTF Argo Navis project contains the CUDA collector and supporting + libraries that was done as a result of a DOE SBIR grant.""" + homepage = "http://sourceforge.net/p/cbtf/wiki/Home/" + + # Mirror access template example + #url = "file:/g/g24/jeg/cbtf-argonavis-1.5.tar.gz" + #version('1.5', '1f7f6512f55409ed2135cfceabe26b82') + + version('1.6', branch='master', git='http://git.code.sf.net/p/cbtf-argonavis/cbtf-argonavis') + + depends_on("cmake@3.0.2:") + depends_on("papi") + depends_on("cbtf") + depends_on("cbtf-krell") + depends_on("cuda") + + parallel = False + + def install(self, spec, prefix): + + # Look for package installation information in the cbtf and cbtf-krell prefixes + cmake_prefix_path = join_path(spec['cbtf'].prefix) + ':' + join_path(spec['cbtf-krell'].prefix) + + # FIXME, hard coded for testing purposes, we will alter when the external package feature is available + cuda_prefix_path = "/usr/local/cudatoolkit-6.0" + cupti_prefix_path = "/usr/local/cudatoolkit-6.0/extras/CUPTI" + + + with working_dir('CUDA'): + with working_dir('build', create=True): + cmake('..', + '-DCMAKE_INSTALL_PREFIX=%s' % prefix, + '-DCMAKE_LIBRARY_PATH=%s' % prefix.lib64, + '-DCMAKE_PREFIX_PATH=%s' % cmake_prefix_path, + '-DCUDA_INSTALL_PATH=%s' % cuda_prefix_path, + '-DCUDA_ROOT=%s' % cuda_prefix_path, + '-DCUPTI_ROOT=%s' % cupti_prefix_path, + '-DCUDA_DIR=%s' % cuda_prefix_path, + '-DPAPI_ROOT=%s' % spec['papi'].prefix, + '-DCBTF_PREFIX=%s' % spec['cbtf'].prefix, + *std_cmake_args) + make("clean") + make() + make("install") + diff --git a/var/spack/packages/cbtf-krell/package.py b/var/spack/packages/cbtf-krell/package.py new file mode 100644 index 0000000000..9458ac113c --- /dev/null +++ b/var/spack/packages/cbtf-krell/package.py @@ -0,0 +1,116 @@ +################################################################################ +# Copyright (c) 2015 Krell Institute. All Rights Reserved. +# +# This program is free software; you can redistribute it and/or modify it under +# the terms of the GNU General Public License as published by the Free Software +# Foundation; either version 2 of the License, or (at your option) any later +# version. +# +# This program is distributed in the hope that it will be useful, but WITHOUT +# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS +# FOR A PARTICULAR PURPOSE. See the GNU General Public License for more +# details. +# +# You should have received a copy of the GNU General Public License along with +# this program; if not, write to the Free Software Foundation, Inc., 59 Temple +# Place, Suite 330, Boston, MA 02111-1307 USA +################################################################################ + +from spack import * + +class CbtfKrell(Package): + """CBTF Krell project contains the Krell Institute contributions to the CBTF project. + These contributions include many performance data collectors and support + libraries as well as some example tools that drive the data collection at + HPC levels of scale.""" + homepage = "http://sourceforge.net/p/cbtf/wiki/Home/" + + # optional mirror access template + #url = "file:/g/g24/jeg/cbtf-krell-1.5.tar.gz" + #version('1.5', 'b13f6df6a93c44149d977773dd776d2f') + + version('1.6', branch='master', git='http://git.code.sf.net/p/cbtf-krell/cbtf-krell') + + + # Dependencies for cbtf-krell + + # For binutils service + depends_on("binutils@2.24+krellpatch") + + # collectionTool + depends_on("boost@1.50.0") + depends_on("dyninst@8.2.1") + depends_on("mrnet@4.1.0:+lwthreads") + depends_on("xerces-c@3.1.1:") + depends_on("cbtf") + + # for services and collectors + depends_on("libmonitor+krellpatch") + depends_on("libunwind") + depends_on("papi") + + # MPI Installations + # These have not worked either for build or execution, commenting out for now + #depends_on("openmpi") + #depends_on("mvapich2@2.0") + #depends_on("mpich") + + parallel = False + + def install(self, spec, prefix): + + # Add in paths for finding package config files that tell us where to find these packages + cmake_prefix_path = join_path(spec['cbtf'].prefix) + ':' + join_path(spec['dyninst'].prefix) + + # FIXME - hard code path until external package support is available + # Need to change this path and/or add additional paths for MPI experiment support on different platforms + #openmpi_prefix_path = "/opt/openmpi-1.8.2" + #mvapich_prefix_path = "/usr/local/tools/mvapich-gnu" + + # Other possibilities, they will need a -DMVAPICH_DIR=, etc clause in the cmake command to be recognized + # mvapich_prefix_path = "<mvapich install path>" + # mvapich2_prefix_path = "<mvapich2 install path>" + # mpich2_prefix_path = "<mpich2 install path>" + # mpich_prefix_path = "<mpich install path>" + # mpt_prefix_path = "<mpt install path>" + + # Add in paths for cuda if requested via the cuda variant + # FIXME - hard code path until external package support is available + #if '+cuda' in spec: + # cuda_prefix_path = "/usr/local/cuda-6.0" + # cupti_prefix_path = "/usr/local/cuda-6.0/extras/CUPTI" + #else: + # cuda_prefix_path = "" + # cupti_prefix_path = "" + + #'-DMVAPICH2_DIR=%s' % spec['mvapich2'].prefix, + #'-DOPENMPI_DIR=%s' % spec['openmpi'].prefix, + #'-DMPICH_DIR=%s' % spec['mpich'].prefix, + #'-DCMAKE_LIBRARY_PATH=%s' % prefix.lib64, + #'-DOPENMPI_DIR=%s' % openmpi_prefix_path, + #'-DMVAPICH_DIR=%s' % mvapich_prefix_path, + #'-DLIB_SUFFIX=64', + #'-DCUDA_DIR=%s' % cuda_prefix_path, + #'-DCUPTI_DIR=%s' % cupti_prefix_path, + + # Build cbtf-krell with cmake + with working_dir('build_cbtf_krell', create=True): + cmake('..', + '-DCMAKE_BUILD_TYPE=Debug', + '-DCMAKE_INSTALL_PREFIX=%s' % prefix, + '-DCBTF_DIR=%s' % spec['cbtf'].prefix, + '-DBINUTILS_DIR=%s' % spec['binutils'].prefix, + '-DLIBMONITOR_DIR=%s' % spec['libmonitor'].prefix, + '-DLIBUNWIND_DIR=%s' % spec['libunwind'].prefix, + '-DPAPI_DIR=%s' % spec['papi'].prefix, + '-DBOOST_DIR=%s' % spec['boost'].prefix, + '-DMRNET_DIR=%s' % spec['mrnet'].prefix, + '-DDYNINST_DIR=%s' % spec['dyninst'].prefix, + '-DXERCESC_DIR=%s' % spec['xerces-c'].prefix, + '-DCMAKE_PREFIX_PATH=%s' % cmake_prefix_path, + *std_cmake_args) + + make("clean") + make() + make("install") + diff --git a/var/spack/packages/cbtf-lanl/package.py b/var/spack/packages/cbtf-lanl/package.py new file mode 100644 index 0000000000..2da9e8a1f7 --- /dev/null +++ b/var/spack/packages/cbtf-lanl/package.py @@ -0,0 +1,60 @@ +################################################################################ +# Copyright (c) 2015 Krell Institute. All Rights Reserved. +# +# This program is free software; you can redistribute it and/or modify it under +# the terms of the GNU General Public License as published by the Free Software +# Foundation; either version 2 of the License, or (at your option) any later +# version. +# +# This program is distributed in the hope that it will be useful, but WITHOUT +# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS +# FOR A PARTICULAR PURPOSE. See the GNU General Public License for more +# details. +# +# You should have received a copy of the GNU General Public License along with +# this program; if not, write to the Free Software Foundation, Inc., 59 Temple +# Place, Suite 330, Boston, MA 02111-1307 USA +################################################################################ + +from spack import * + +class CbtfLanl(Package): + """CBTF LANL project contains a memory tool and data center type system command monitoring tool.""" + homepage = "http://sourceforge.net/p/cbtf/wiki/Home/" + + + # Mirror access template example + #url = "file:/g/g24/jeg/cbtf-lanl-1.5.tar.gz" + #version('1.5', 'c3f78f967b0a42c6734ce4be0e602426') + + version('1.6', branch='master', git='http://git.code.sf.net/p/cbtf-lanl/cbtf-lanl') + + + # Dependencies for cbtf-krell + depends_on("boost@1.50") + depends_on("mrnet@4.1.0:+lwthreads") + depends_on("xerces-c@3.1.1:") + depends_on("cbtf") + depends_on("cbtf-krell") + + parallel = False + + def install(self, spec, prefix): + + # Add in paths for finding package config files that tell us where to find these packages + cmake_prefix_path = join_path(spec['cbtf'].prefix) + ':' + join_path(spec['cbtf-krell'].prefix) + + with working_dir('build', create=True): + cmake('..', + '-DCBTF_DIR=%s' % spec['cbtf'].prefix, + '-DCBTF_KRELL_DIR=%s' % spec['cbtf-krell'].prefix, + '-DMRNET_DIR=%s' % spec['mrnet'].prefix, + '-DXERCESC_DIR=%s' % spec['xerces-c'].prefix, + '-DCMAKE_PREFIX_PATH=%s' % cmake_prefix_path, + '-DCMAKE_MODULE_PATH=%s' % join_path(prefix.share,'KrellInstitute','cmake'), + *std_cmake_args) + + make("clean") + make() + make("install") + diff --git a/var/spack/packages/cbtf/package.py b/var/spack/packages/cbtf/package.py new file mode 100644 index 0000000000..52e6a07020 --- /dev/null +++ b/var/spack/packages/cbtf/package.py @@ -0,0 +1,62 @@ +################################################################################ +# Copyright (c) 2015 Krell Institute. All Rights Reserved. +# +# This program is free software; you can redistribute it and/or modify it under +# the terms of the GNU General Public License as published by the Free Software +# Foundation; either version 2 of the License, or (at your option) any later +# version. +# +# This program is distributed in the hope that it will be useful, but WITHOUT +# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS +# FOR A PARTICULAR PURPOSE. See the GNU General Public License for more +# details. +# +# You should have received a copy of the GNU General Public License along with +# this program; if not, write to the Free Software Foundation, Inc., 59 Temple +# Place, Suite 330, Boston, MA 02111-1307 USA +################################################################################ + +from spack import * + +class Cbtf(Package): + """CBTF project contains the base code for CBTF that supports creating components, + component networks and the support to connect these components and component + networks into sequential and distributed network tools.""" + homepage = "http://sourceforge.net/p/cbtf/wiki/Home" + + # Mirror access template example + #url = "file:/g/g24/jeg/cbtf-1.5.tar.gz" + #version('1.6', '1ca88a8834759c4c74452cb97fe7b70a') + + # Use when the git repository is available + version('1.6', branch='master', git='http://git.code.sf.net/p/cbtf/cbtf') + + depends_on("cmake") + #depends_on("boost@1.42.0:") + depends_on("boost@1.50.0") + depends_on("mrnet@4.1.0+lwthreads") + depends_on("xerces-c@3.1.1:") + depends_on("libxml2") + + parallel = False + + def install(self, spec, prefix): + with working_dir('build', create=True): + + # Boost_NO_SYSTEM_PATHS Set to TRUE to suppress searching + # in system paths (or other locations outside of BOOST_ROOT + # or BOOST_INCLUDEDIR). Useful when specifying BOOST_ROOT. + # Defaults to OFF. + + cmake('..', + '--debug-output', + '-DBoost_NO_SYSTEM_PATHS=TRUE', + '-DXERCESC_DIR=%s' % spec['xerces-c'].prefix, + '-DBOOST_ROOT=%s' % spec['boost'].prefix, + '-DMRNET_DIR=%s' % spec['mrnet'].prefix, + '-DCMAKE_MODULE_PATH=%s' % join_path(prefix.share,'KrellInstitute','cmake'), + *std_cmake_args) + + make("clean") + make() + make("install") diff --git a/var/spack/packages/cfitsio/package.py b/var/spack/packages/cfitsio/package.py new file mode 100644 index 0000000000..ff450cb5f3 --- /dev/null +++ b/var/spack/packages/cfitsio/package.py @@ -0,0 +1,18 @@ +from spack import * + +class Cfitsio(Package): + """ + CFITSIO is a library of C and Fortran subroutines for reading and writing + data files in FITS (Flexible Image Transport System) data format. + """ + homepage = 'http://heasarc.gsfc.nasa.gov/fitsio/' + version('3.370', 'abebd2d02ba5b0503c633581e3bfa116') + + def url_for_version(self, v): + url = 'ftp://heasarc.gsfc.nasa.gov/software/fitsio/c/cfitsio{0}.tar.gz' + return url.format(str(v).replace('.', '')) + + def install(self, spec, prefix): + configure('--prefix=' + prefix) + make() + make('install') diff --git a/var/spack/packages/cmake/package.py b/var/spack/packages/cmake/package.py index c24a80748c..cb54c92d69 100644 --- a/var/spack/packages/cmake/package.py +++ b/var/spack/packages/cmake/package.py @@ -43,6 +43,7 @@ class Cmake(Package): def install(self, spec, prefix): configure('--prefix=' + prefix, - '--parallel=' + str(make_jobs)) + '--parallel=' + str(make_jobs), + '--', '-DCMAKE_USE_OPENSSL=ON') make() make('install') diff --git a/var/spack/packages/cube/package.py b/var/spack/packages/cube/package.py index d97cd25636..cc1c684594 100644 --- a/var/spack/packages/cube/package.py +++ b/var/spack/packages/cube/package.py @@ -12,6 +12,9 @@ class Cube(Package): homepage = "http://www.scalasca.org/software/cube-4.x/download.html" url = "http://apps.fz-juelich.de/scalasca/releases/cube/4.2/dist/cube-4.2.3.tar.gz" + version('4.3.3', '07e109248ed8ffc7bdcce614264a2909', + url='http://apps.fz-juelich.de/scalasca/releases/cube/4.3/dist/cube-4.3.3.tar.gz') + version('4.2.3', '8f95b9531f5a8f8134f279c2767c9b20') version('4.3TP1', 'a2090fbc7b2ba394bd5c09ba971e237f', diff --git a/var/spack/packages/dyninst/package.py b/var/spack/packages/dyninst/package.py index 7f8598e0e5..0111dcbe08 100644 --- a/var/spack/packages/dyninst/package.py +++ b/var/spack/packages/dyninst/package.py @@ -49,14 +49,15 @@ class Dyninst(Package): with working_dir('spack-build', create=True): cmake('..', - '-DBoost_INCLUDE_DIR=%s' % spec['boost'].prefix.include, - '-DBoost_LIBRARY_DIR=%s' % spec['boost'].prefix.lib, + '-DBoost_INCLUDE_DIR=%s' % spec['boost'].prefix.include, + '-DBoost_LIBRARY_DIR=%s' % spec['boost'].prefix.lib, '-DBoost_NO_SYSTEM_PATHS=TRUE', '-DLIBELF_INCLUDE_DIR=%s' % join_path(libelf.include, 'libelf'), '-DLIBELF_LIBRARIES=%s' % join_path(libelf.lib, 'libelf.so'), '-DLIBDWARF_INCLUDE_DIR=%s' % libdwarf.include, '-DLIBDWARF_LIBRARIES=%s' % join_path(libdwarf.lib, 'libdwarf.so'), *std_cmake_args) + make() make("install") diff --git a/var/spack/packages/global/package.py b/var/spack/packages/global/package.py index a77b1bdc09..e8f06516d9 100644 --- a/var/spack/packages/global/package.py +++ b/var/spack/packages/global/package.py @@ -4,7 +4,7 @@ import os class Global(Package): """ The Gnu Global tagging system """ - # FIXME: add a proper url for your package's homepage here. + homepage = "http://www.gnu.org/software/global" url = "http://tamacom.com/global/global-6.5.tar.gz" @@ -13,9 +13,9 @@ class Global(Package): depends_on('exuberant-ctags') def install(self, spec, prefix): - config_args = ['--prefix={}'.format(prefix)] + config_args = ['--prefix={0}'.format(prefix)] - config_args.append('--with-exuberant-ctags={}'.format( + config_args.append('--with-exuberant-ctags={0}'.format( os.path.join(spec['exuberant-ctags'].prefix.bin, 'ctags'))) configure(*config_args) diff --git a/var/spack/packages/libmonitor/libmonitorkrell-0000.patch b/var/spack/packages/libmonitor/libmonitorkrell-0000.patch new file mode 100644 index 0000000000..3a90106850 --- /dev/null +++ b/var/spack/packages/libmonitor/libmonitorkrell-0000.patch @@ -0,0 +1,18 @@ +--- libmonitor-20130218/configure 2013-02-17 23:08:32.000000000 -0800 ++++ libmonitor-20130218-fixes/configure 2013-02-18 10:34:05.237918411 -0800 +@@ -3600,13 +3600,13 @@ + CFLAGS=$ac_save_CFLAGS + elif test $ac_cv_prog_cc_g = yes; then + if test "$GCC" = yes; then +- CFLAGS="-g -O2" ++ CFLAGS="-g -O0" + else + CFLAGS="-g" + fi + else + if test "$GCC" = yes; then +- CFLAGS="-O2" ++ CFLAGS="-O0" + else + CFLAGS= + fi diff --git a/var/spack/packages/libmonitor/libmonitorkrell-0001.patch b/var/spack/packages/libmonitor/libmonitorkrell-0001.patch new file mode 100644 index 0000000000..85d69595c0 --- /dev/null +++ b/var/spack/packages/libmonitor/libmonitorkrell-0001.patch @@ -0,0 +1,395 @@ +--- libmonitor-20130218/src/callback.c 2013-02-17 23:08:32.000000000 -0800 ++++ libmonitor-20130218-fixes/src/callback.c 2013-02-18 10:34:17.839842826 -0800 +@@ -173,3 +173,18 @@ + MONITOR_DEBUG1("(default callback)\n"); + return 0; + } ++ ++ ++void __attribute__ ((weak)) ++monitor_mpi_post_comm_rank(void) ++{ ++ MONITOR_DEBUG1("(default callback)\n"); ++} ++ ++void __attribute__ ((weak)) ++monitor_mpi_pcontrol(int level) ++{ ++ MONITOR_DEBUG("(default callback) level = %d\n", level); ++} ++ ++ +--- libmonitor-20130218/src/main.c 2013-02-17 23:08:32.000000000 -0800 ++++ libmonitor-20130218-fixes/src/main.c 2013-02-18 10:34:17.839842826 -0800 +@@ -230,6 +230,44 @@ + monitor_fini_library_called = 1; + } + ++/* ++ * Internal monitor functions. ++ */ ++ ++struct monitor_thread_node * __attribute__ ((weak)) ++monitor_get_tn(void) ++{ ++ return &monitor_main_tn; ++} ++ ++int __attribute__ ((weak)) ++monitor_get_thread_num(void) ++{ ++ return (0); ++} ++ ++void __attribute__ ((weak)) ++monitor_reset_thread_list(struct monitor_thread_node *main_tn) ++{ ++ MONITOR_DEBUG1("(weak)\n"); ++ return; ++} ++ ++void __attribute__ ((weak)) ++monitor_thread_release(void) ++{ ++ MONITOR_DEBUG1("(weak)\n"); ++ return; ++} ++ ++void __attribute__ ((weak)) ++monitor_thread_shootdown(void) ++{ ++ MONITOR_DEBUG1("(weak)\n"); ++ return; ++} ++ ++ + void + monitor_begin_process_fcn(void *user_data, int is_fork) + { +@@ -625,12 +663,6 @@ + return (monitor_main_tn.tn_user_data); + } + +-int __attribute__ ((weak)) +-monitor_get_thread_num(void) +-{ +- return (0); +-} +- + void * __attribute__ ((weak)) + monitor_get_addr_thread_start(void) + { +@@ -691,33 +723,3 @@ + MONITOR_DEBUG1("(weak)\n"); + return (FALSE); + } +- +-/* +- * Internal monitor functions. +- */ +-struct monitor_thread_node * __attribute__ ((weak)) +-monitor_get_tn(void) +-{ +- return &monitor_main_tn; +-} +- +-void __attribute__ ((weak)) +-monitor_reset_thread_list(struct monitor_thread_node *main_tn) +-{ +- MONITOR_DEBUG1("(weak)\n"); +- return; +-} +- +-void __attribute__ ((weak)) +-monitor_thread_release(void) +-{ +- MONITOR_DEBUG1("(weak)\n"); +- return; +-} +- +-void __attribute__ ((weak)) +-monitor_thread_shootdown(void) +-{ +- MONITOR_DEBUG1("(weak)\n"); +- return; +-} +--- libmonitor-20130218/src/monitor.h 2013-02-17 23:08:32.000000000 -0800 ++++ libmonitor-20130218-fixes/src/monitor.h 2013-02-18 10:34:17.840842821 -0800 +@@ -73,6 +73,11 @@ + extern void monitor_fini_mpi(void); + extern void monitor_mpi_post_fini(void); + ++extern void monitor_mpi_post_comm_rank(void); ++extern void monitor_mpi_pcontrol(int level); ++ ++ ++ + /* + * Monitor support functions. + */ +--- libmonitor-20130218/src/mpi_comm_c.c 2013-02-17 23:08:32.000000000 -0800 ++++ libmonitor-20130218-fixes/src/mpi_comm_c.c 2013-02-18 10:34:17.878842622 -0800 +@@ -36,5 +36,8 @@ + ret = (*real_mpi_comm_rank)(comm, rank); + monitor_set_mpi_size_rank(size, *rank); + ++ monitor_mpi_post_comm_rank(); ++ ++ + return (ret); + } +--- libmonitor-20130218/src/mpi_comm_f0.c 2013-02-17 23:08:32.000000000 -0800 ++++ libmonitor-20130218-fixes/src/mpi_comm_f0.c 2013-02-18 10:34:17.879842617 -0800 +@@ -34,4 +34,5 @@ + (*real_mpi_comm_size)(comm, &size, ierror); + (*real_mpi_comm_rank)(comm, rank, ierror); + monitor_set_mpi_size_rank(size, *rank); ++ monitor_mpi_post_comm_rank(); + } +--- libmonitor-20130218/src/mpi_comm_f1.c 2013-02-17 23:08:32.000000000 -0800 ++++ libmonitor-20130218-fixes/src/mpi_comm_f1.c 2013-02-18 10:34:17.880842612 -0800 +@@ -34,4 +34,5 @@ + (*real_mpi_comm_size)(comm, &size, ierror); + (*real_mpi_comm_rank)(comm, rank, ierror); + monitor_set_mpi_size_rank(size, *rank); ++ monitor_mpi_post_comm_rank(); + } +--- libmonitor-20130218/src/mpi_comm_f2.c 2013-02-17 23:08:32.000000000 -0800 ++++ libmonitor-20130218-fixes/src/mpi_comm_f2.c 2013-02-18 10:34:17.880842612 -0800 +@@ -34,4 +34,5 @@ + (*real_mpi_comm_size)(comm, &size, ierror); + (*real_mpi_comm_rank)(comm, rank, ierror); + monitor_set_mpi_size_rank(size, *rank); ++ monitor_mpi_post_comm_rank(); + } +--- libmonitor-20130218/src/pmpi.c 2013-02-17 23:08:32.000000000 -0800 ++++ libmonitor-20130218-fixes/src/pmpi.c 2013-02-18 10:34:17.881842607 -0800 +@@ -52,11 +52,15 @@ + typedef int mpi_init_thread_fcn_t(int *, char ***, int, int *); + typedef int mpi_finalize_fcn_t(void); + typedef int mpi_comm_fcn_t(void *, int *); ++typedef int mpi_pcontrol_fcn_t(int ); ++ + + typedef void f_mpi_init_fcn_t(int *); + typedef void f_mpi_init_thread_fcn_t(int *, int *, int *); + typedef void f_mpi_finalize_fcn_t(int *); + typedef void f_mpi_comm_fcn_t(int *, int *, int *); ++typedef int f_mpi_pcontrol_fcn_t(int ); ++ + + static mpi_init_fcn_t *real_pmpi_init = NULL; + static f_mpi_init_fcn_t *real_pmpi_init_f0 = NULL; +@@ -83,6 +87,12 @@ + static f_mpi_comm_fcn_t *real_pmpi_comm_rank_f1 = NULL; + static f_mpi_comm_fcn_t *real_pmpi_comm_rank_f2 = NULL; + ++static mpi_pcontrol_fcn_t *real_pmpi_pcontrol = NULL; ++static f_mpi_pcontrol_fcn_t *real_pmpi_pcontrol_f0 = NULL; ++static f_mpi_pcontrol_fcn_t *real_pmpi_pcontrol_f1 = NULL; ++static f_mpi_pcontrol_fcn_t *real_pmpi_pcontrol_f2 = NULL; ++ ++ + /* + *---------------------------------------------------------------------- + * PMPI_INIT OVERRIDE FUNCTIONS +@@ -297,6 +307,7 @@ + ret = (*real_pmpi_comm_size)(comm, &size); + ret = (*real_pmpi_comm_rank)(comm, rank); + monitor_set_mpi_size_rank(size, *rank); ++ monitor_mpi_post_comm_rank(); + + return (ret); + } +@@ -308,7 +319,9 @@ + MONITOR_GET_REAL_NAME_WRAP(rank_var, rank_fcn); \ + (*size_var)(comm, &size, ierror); \ + (*rank_var)(comm, rank, ierror); \ +- monitor_set_mpi_size_rank(size, *rank); ++ monitor_set_mpi_size_rank(size, *rank); \ ++ monitor_mpi_post_comm_rank(); ++ + + /* + * In Fortran, MPI_Comm is always int. +@@ -333,3 +346,48 @@ + FORTRAN_COMM_RANK_BODY(real_pmpi_comm_size_f2, pmpi_comm_size__, + real_pmpi_comm_rank_f2, pmpi_comm_rank__); + } ++ ++ ++/* ++ *---------------------------------------------------------------------- ++ * PMPI_PCONTROL OVERRIDE FUNCTIONS ++ *---------------------------------------------------------------------- ++ */ ++ ++int ++MONITOR_WRAP_NAME(PMPI_Pcontrol)(int level) ++{ ++ int ret; ++ ++ MONITOR_DEBUG("level = %d\n", level); \ ++ MONITOR_GET_REAL_NAME_WRAP(real_pmpi_pcontrol, PMPI_Pcontrol); ++ ret = (*real_pmpi_pcontrol) (level) ; ++ monitor_mpi_pcontrol(level); ++ ++ return (ret); ++} ++ ++#define FORTRAN_PCONTROL_BODY(var_name, fcn_name)\ ++ int ret; \ ++ MONITOR_DEBUG("level = %d\n", level); \ ++ MONITOR_GET_REAL_NAME_WRAP(var_name, fcn_name); \ ++ ret = (*var_name) (level) ; \ ++ monitor_mpi_pcontrol(level); ++ ++int ++MONITOR_WRAP_NAME(pmpi_pcontrol)(int level) ++{ ++ FORTRAN_PCONTROL_BODY(real_pmpi_pcontrol_f0, pmpi_pcontrol); ++} ++ ++int ++MONITOR_WRAP_NAME(pmpi_pcontrol_)(int level) ++{ ++ FORTRAN_PCONTROL_BODY(real_pmpi_pcontrol_f1, pmpi_pcontrol_); ++} ++ ++int ++MONITOR_WRAP_NAME(pmpi_pcontrol__)(int level) ++{ ++ FORTRAN_PCONTROL_BODY(real_pmpi_pcontrol_f2, pmpi_pcontrol__); ++} +--- libmonitor-20130218/src/mpi_pcontrol_c.c 1969-12-31 16:00:00.000000000 -0800 ++++ libmonitor-20130218-fixes/src/mpi_pcontrol_c.c 2013-02-18 10:34:17.882842602 -0800 +@@ -0,0 +1,30 @@ ++/* ++ * Override MPI_Pcontrol in C/C++. ++ * ++ * ++ */ ++ ++#include "config.h" ++#include "common.h" ++#include "monitor.h" ++ ++typedef int mpi_pcontrol_fcn_t(int level); ++#ifdef MONITOR_STATIC ++extern mpi_pcontrol_fcn_t __real_MPI_Pcontrol; ++#endif ++static mpi_pcontrol_fcn_t *real_mpi_pcontrol = NULL; ++ ++int ++MONITOR_WRAP_NAME(MPI_Pcontrol)(int level) ++{ ++ int ret, count; ++ ++ MONITOR_DEBUG("level = %d\n", level); \ ++ ++ MONITOR_GET_REAL_NAME_WRAP(real_mpi_pcontrol, MPI_Pcontrol); ++ ret = (*real_mpi_pcontrol)(level); ++ monitor_mpi_pcontrol(level); ++ ++ ++ return (ret); ++} +--- libmonitor-20130218/src/mpi_pcontrol_f0.c 1969-12-31 16:00:00.000000000 -0800 ++++ libmonitor-20130218-fixes/src/mpi_pcontrol_f0.c 2013-02-18 10:34:17.882842602 -0800 +@@ -0,0 +1,24 @@ ++/* ++ * Override mpi_pcontrol in Fortran. ++ * ++ */ ++ ++#include "config.h" ++#include "common.h" ++#include "monitor.h" ++ ++typedef void mpi_pcontrol_fcn_t(int level); ++#ifdef MONITOR_STATIC ++extern mpi_pcontrol_fcn_t __real_mpi_pcontrol; ++#endif ++static mpi_pcontrol_fcn_t *real_mpi_pcontrol = NULL; ++ ++int ++MONITOR_WRAP_NAME(mpi_pcontrol)(int level) ++{ ++ int count; ++ ++ MONITOR_DEBUG1("\n"); ++ MONITOR_GET_REAL_NAME_WRAP(real_mpi_pcontrol, mpi_pcontrol); ++ (*real_mpi_pcontrol)(level); ++} +--- libmonitor-20130218/src/mpi_pcontrol_f1.c 1969-12-31 16:00:00.000000000 -0800 ++++ libmonitor-20130218-fixes/src/mpi_pcontrol_f1.c 2013-02-18 10:34:17.883842597 -0800 +@@ -0,0 +1,24 @@ ++/* ++ * Override mpi_pcontrol_ in Fortran. ++ * ++ */ ++ ++#include "config.h" ++#include "common.h" ++#include "monitor.h" ++ ++typedef void mpi_pcontrol_fcn_t(int level); ++#ifdef MONITOR_STATIC ++extern mpi_pcontrol_fcn_t __real_mpi_pcontrol_; ++#endif ++static mpi_pcontrol_fcn_t *real_mpi_pcontrol = NULL; ++ ++int ++MONITOR_WRAP_NAME(mpi_pcontrol_)(int level) ++{ ++ int count; ++ ++ MONITOR_DEBUG1("\n"); ++ MONITOR_GET_REAL_NAME_WRAP(real_mpi_pcontrol, mpi_pcontrol_); ++ (*real_mpi_pcontrol)(level); ++} +--- libmonitor-20130218/src/mpi_pcontrol_f2.c 1969-12-31 16:00:00.000000000 -0800 ++++ libmonitor-20130218-fixes/src/mpi_pcontrol_f2.c 2013-02-18 10:34:17.883842597 -0800 +@@ -0,0 +1,24 @@ ++/* ++ * Override mpi_pcontrol__ in Fortran. ++ * ++ */ ++ ++#include "config.h" ++#include "common.h" ++#include "monitor.h" ++ ++typedef void mpi_pcontrol_fcn_t(int level); ++#ifdef MONITOR_STATIC ++extern mpi_pcontrol_fcn_t __real_mpi_pcontrol__; ++#endif ++static mpi_pcontrol_fcn_t *real_mpi_pcontrol = NULL; ++ ++int ++MONITOR_WRAP_NAME(mpi_pcontrol__)(int level) ++{ ++ int count; ++ ++ MONITOR_DEBUG1("\n"); ++ MONITOR_GET_REAL_NAME_WRAP(real_mpi_pcontrol, mpi_pcontrol__); ++ (*real_mpi_pcontrol)(level); ++} +--- libmonitor-20130218/src/Makefile.am 2013-02-17 23:08:32.000000000 -0800 ++++ libmonitor-20130218-fixes/src/Makefile.am 2013-02-18 10:34:17.931842343 -0800 +@@ -38,10 +38,11 @@ + MONITOR_THREAD_FILES = pthread.c + MONITOR_SCRIPT_FILES = monitor-link monitor-run + MONITOR_MPI_FILES = \ +- mpi_init_c.c mpi_init_thread_c.c mpi_final_c.c mpi_comm_c.c \ +- mpi_init_f0.c mpi_init_thread_f0.c mpi_final_f0.c mpi_comm_f0.c \ +- mpi_init_f1.c mpi_init_thread_f1.c mpi_final_f1.c mpi_comm_f1.c \ +- mpi_init_f2.c mpi_init_thread_f2.c mpi_final_f2.c mpi_comm_f2.c ++ mpi_init_c.c mpi_init_thread_c.c mpi_final_c.c mpi_comm_c.c mpi_pcontrol_c.c \ ++ mpi_init_f0.c mpi_init_thread_f0.c mpi_final_f0.c mpi_comm_f0.c mpi_pcontrol_f0.c \ ++ mpi_init_f1.c mpi_init_thread_f1.c mpi_final_f1.c mpi_comm_f1.c mpi_pcontrol_f1.c \ ++ mpi_init_f2.c mpi_init_thread_f2.c mpi_final_f2.c mpi_comm_f2.c mpi_pcontrol_f2.c ++ + + include_HEADERS = monitor.h + bin_SCRIPTS = diff --git a/var/spack/packages/libmonitor/libmonitorkrell-0002.patch b/var/spack/packages/libmonitor/libmonitorkrell-0002.patch new file mode 100644 index 0000000000..514dfdf13e --- /dev/null +++ b/var/spack/packages/libmonitor/libmonitorkrell-0002.patch @@ -0,0 +1,106 @@ +--- libmonitor-20130218/src/pmpi.c 2013-02-18 11:34:17.000000000 -0700 ++++ libmonitor-20130218-fixed/src/pmpi.c 2013-04-11 10:03:59.300550393 -0600 +@@ -355,7 +355,7 @@ + */ + + int +-MONITOR_WRAP_NAME(PMPI_Pcontrol)(int level) ++MONITOR_WRAP_NAME(PMPI_Pcontrol)(int level, int *ierror ) + { + int ret; + +@@ -375,19 +375,19 @@ + monitor_mpi_pcontrol(level); + + int +-MONITOR_WRAP_NAME(pmpi_pcontrol)(int level) ++MONITOR_WRAP_NAME(pmpi_pcontrol)(int level, int *ierror ) + { + FORTRAN_PCONTROL_BODY(real_pmpi_pcontrol_f0, pmpi_pcontrol); + } + + int +-MONITOR_WRAP_NAME(pmpi_pcontrol_)(int level) ++MONITOR_WRAP_NAME(pmpi_pcontrol_)(int level, int *ierror ) + { + FORTRAN_PCONTROL_BODY(real_pmpi_pcontrol_f1, pmpi_pcontrol_); + } + + int +-MONITOR_WRAP_NAME(pmpi_pcontrol__)(int level) ++MONITOR_WRAP_NAME(pmpi_pcontrol__)(int level, int *ierror ) + { + FORTRAN_PCONTROL_BODY(real_pmpi_pcontrol_f2, pmpi_pcontrol__); + } +--- libmonitor-20130218/src/mpi_pcontrol_f0.c 2013-02-18 11:34:17.000000000 -0700 ++++ libmonitor-20130218-fixed/src/mpi_pcontrol_f0.c 2013-04-11 10:13:47.783002000 -0600 +@@ -7,18 +7,18 @@ + #include "common.h" + #include "monitor.h" + +-typedef void mpi_pcontrol_fcn_t(int level); ++typedef void mpi_pcontrol_fcn_t(int level, int *ierror); + #ifdef MONITOR_STATIC + extern mpi_pcontrol_fcn_t __real_mpi_pcontrol; + #endif + static mpi_pcontrol_fcn_t *real_mpi_pcontrol = NULL; + + int +-MONITOR_WRAP_NAME(mpi_pcontrol)(int level) ++MONITOR_WRAP_NAME(mpi_pcontrol)(int level, int *ierror) + { + int count; + + MONITOR_DEBUG1("\n"); + MONITOR_GET_REAL_NAME_WRAP(real_mpi_pcontrol, mpi_pcontrol); +- (*real_mpi_pcontrol)(level); ++ (*real_mpi_pcontrol)(level, ierror); + } +--- libmonitor-20130218/src/mpi_pcontrol_f1.c 2013-02-18 11:34:17.000000000 -0700 ++++ libmonitor-20130218-fixed/src/mpi_pcontrol_f1.c 2013-04-11 10:14:08.039214000 -0600 +@@ -7,18 +7,18 @@ + #include "common.h" + #include "monitor.h" + +-typedef void mpi_pcontrol_fcn_t(int level); ++typedef void mpi_pcontrol_fcn_t(int level, int *ierror); + #ifdef MONITOR_STATIC + extern mpi_pcontrol_fcn_t __real_mpi_pcontrol_; + #endif + static mpi_pcontrol_fcn_t *real_mpi_pcontrol = NULL; + + int +-MONITOR_WRAP_NAME(mpi_pcontrol_)(int level) ++MONITOR_WRAP_NAME(mpi_pcontrol_)(int level, int *ierror) + { + int count; + + MONITOR_DEBUG1("\n"); + MONITOR_GET_REAL_NAME_WRAP(real_mpi_pcontrol, mpi_pcontrol_); +- (*real_mpi_pcontrol)(level); ++ (*real_mpi_pcontrol)(level, ierror); + } +--- libmonitor-20130218/src/mpi_pcontrol_f2.c 2013-02-18 11:34:17.000000000 -0700 ++++ libmonitor-20130218-fixed/src/mpi_pcontrol_f2.c 2013-04-11 10:14:19.000960000 -0600 +@@ -7,18 +7,18 @@ + #include "common.h" + #include "monitor.h" + +-typedef void mpi_pcontrol_fcn_t(int level); ++typedef void mpi_pcontrol_fcn_t(int level, int *ierror); + #ifdef MONITOR_STATIC + extern mpi_pcontrol_fcn_t __real_mpi_pcontrol__; + #endif + static mpi_pcontrol_fcn_t *real_mpi_pcontrol = NULL; + + int +-MONITOR_WRAP_NAME(mpi_pcontrol__)(int level) ++MONITOR_WRAP_NAME(mpi_pcontrol__)(int level, int *ierror) + { + int count; + + MONITOR_DEBUG1("\n"); + MONITOR_GET_REAL_NAME_WRAP(real_mpi_pcontrol, mpi_pcontrol__); +- (*real_mpi_pcontrol)(level); ++ (*real_mpi_pcontrol)(level, ierror); + } diff --git a/var/spack/packages/libmonitor/package.py b/var/spack/packages/libmonitor/package.py index c75e1a7947..eecf1963e3 100644 --- a/var/spack/packages/libmonitor/package.py +++ b/var/spack/packages/libmonitor/package.py @@ -29,6 +29,13 @@ class Libmonitor(Package): homepage = "http://hpctoolkit.org" version('20130218', svn='http://libmonitor.googlecode.com/svn/trunk/', revision=146) + variant('krellpatch', default=False, description="build with openspeedshop based patch.") + + + patch('libmonitorkrell-0000.patch', when='@20130218+krellpatch') + patch('libmonitorkrell-0001.patch', when='@20130218+krellpatch') + patch('libmonitorkrell-0002.patch', when='@20130218+krellpatch') + def install(self, spec, prefix): configure("--prefix=" + prefix) diff --git a/var/spack/packages/lmod/package.py b/var/spack/packages/lmod/package.py new file mode 100644 index 0000000000..d642594f92 --- /dev/null +++ b/var/spack/packages/lmod/package.py @@ -0,0 +1,26 @@ +from spack import * +import os + +class Lmod(Package): + """ + Lmod is a Lua based module system that easily handles the MODULEPATH + Hierarchical problem. Environment Modules provide a convenient way to + dynamically change the users' environment through modulefiles. This + includes easily adding or removing directories to the PATH environment + variable. Modulefiles for Library packages provide environment variables + that specify where the library and header files can be found. + """ + homepage = "https://www.tacc.utexas.edu/research-development/tacc-projects/lmod" + url = "http://sourceforge.net/projects/lmod/files/Lmod-6.0.1.tar.bz2/download" + + version('6.0.1', '91abf52fe5033bd419ffe2842ebe7af9') + + depends_on("lua@5.2:") + + def install(self, spec, prefix): + # Add our lua to PATH + os.environ['PATH'] = spec['lua'].prefix.bin + ';' + os.environ['PATH'] + + configure('--prefix=%s' % prefix) + make() + make("install") diff --git a/var/spack/packages/mpich/package.py b/var/spack/packages/mpich/package.py index e018a08201..7cfa0a3b61 100644 --- a/var/spack/packages/mpich/package.py +++ b/var/spack/packages/mpich/package.py @@ -85,8 +85,13 @@ class Mpich(Package): mpif77 = os.path.join(bin, 'mpif77') mpif90 = os.path.join(bin, 'mpif90') + spack_cc = os.environ['CC'] + spack_cxx = os.environ['CXX'] + spack_f77 = os.environ['F77'] + spack_fc = os.environ['FC'] + kwargs = { 'ignore_absent' : True, 'backup' : False, 'string' : True } - filter_file('CC="cc"', 'CC="%s"' % self.compiler.cc, mpicc, **kwargs) - filter_file('CXX="c++"', 'CXX="%s"' % self.compiler.cxx, mpicxx, **kwargs) - filter_file('F77="f77"', 'F77="%s"' % self.compiler.f77, mpif77, **kwargs) - filter_file('FC="f90"', 'FC="%s"' % self.compiler.fc, mpif90, **kwargs) + filter_file('CC="%s"' % spack_cc , 'CC="%s"' % self.compiler.cc, mpicc, **kwargs) + filter_file('CXX="%s"'% spack_cxx, 'CXX="%s"' % self.compiler.cxx, mpicxx, **kwargs) + filter_file('F77="%s"'% spack_f77, 'F77="%s"' % self.compiler.f77, mpif77, **kwargs) + filter_file('FC="%s"' % spack_fc , 'FC="%s"' % self.compiler.fc, mpif90, **kwargs) diff --git a/var/spack/packages/mrnet/package.py b/var/spack/packages/mrnet/package.py index 6e9766f275..fed944e45f 100644 --- a/var/spack/packages/mrnet/package.py +++ b/var/spack/packages/mrnet/package.py @@ -7,13 +7,19 @@ class Mrnet(Package): version('4.0.0', 'd00301c078cba57ef68613be32ceea2f') version('4.1.0', '5a248298b395b329e2371bf25366115c') + version('5.0.1', '17f65738cf1b9f9b95647ff85f69ecdd') + variant('lwthreads', default=False, description="Also build the MRNet LW threadsafe libraries") parallel = False depends_on("boost") def install(self, spec, prefix): - configure("--prefix=%s" %prefix, "--enable-shared") + # Build the MRNet LW thread safe libraries when the krelloptions variant is present + if '+lwthreads' in spec: + configure("--prefix=%s" %prefix, "--enable-shared", "--enable-ltwt-threadsafe") + else: + configure("--prefix=%s" %prefix, "--enable-shared") make() make("install") diff --git a/var/spack/packages/mvapich2/package.py b/var/spack/packages/mvapich2/package.py index dc2b2cb23f..23a11b3171 100644 --- a/var/spack/packages/mvapich2/package.py +++ b/var/spack/packages/mvapich2/package.py @@ -1,5 +1,5 @@ from spack import * - +import os class Mvapich2(Package): """MVAPICH2 is an MPI implementation for Infiniband networks.""" @@ -154,3 +154,31 @@ class Mvapich2(Package): configure(*configure_args) make() make("install") + + self.filter_compilers() + + + def filter_compilers(self): + """Run after install to make the MPI compilers use the + compilers that Spack built the package with. + + If this isn't done, they'll have CC, CXX, F77, and FC set + to Spack's generic cc, c++, f77, and f90. We want them to + be bound to whatever compiler they were built with. + """ + bin = self.prefix.bin + mpicc = os.path.join(bin, 'mpicc') + mpicxx = os.path.join(bin, 'mpicxx') + mpif77 = os.path.join(bin, 'mpif77') + mpif90 = os.path.join(bin, 'mpif90') + + spack_cc = os.environ['CC'] + spack_cxx = os.environ['CXX'] + spack_f77 = os.environ['F77'] + spack_fc = os.environ['FC'] + + kwargs = { 'ignore_absent' : True, 'backup' : False, 'string' : True } + filter_file('CC="%s"' % spack_cc , 'CC="%s"' % self.compiler.cc, mpicc, **kwargs) + filter_file('CXX="%s"'% spack_cxx, 'CXX="%s"' % self.compiler.cxx, mpicxx, **kwargs) + filter_file('F77="%s"'% spack_f77, 'F77="%s"' % self.compiler.f77, mpif77, **kwargs) + filter_file('FC="%s"' % spack_fc , 'FC="%s"' % self.compiler.fc, mpif90, **kwargs) diff --git a/var/spack/packages/opari2/package.py b/var/spack/packages/opari2/package.py index daaee61e3a..3f8c65377d 100644 --- a/var/spack/packages/opari2/package.py +++ b/var/spack/packages/opari2/package.py @@ -17,6 +17,8 @@ class Opari2(Package): homepage = "http://www.vi-hps.org/projects/score-p" url = "http://www.vi-hps.org/upload/packages/opari2/opari2-1.1.2.tar.gz" + version('1.1.4', '245d3d11147a06de77909b0805f530c0', + url='http://www.vi-hps.org/upload/packages/opari2/opari2-1.1.4.tar.gz') version('1.1.2', '9a262c7ca05ff0ab5f7775ae96f3539e') backend_user_provided = """\ diff --git a/var/spack/packages/openspeedshop/package.py b/var/spack/packages/openspeedshop/package.py new file mode 100644 index 0000000000..8c71bcb7c3 --- /dev/null +++ b/var/spack/packages/openspeedshop/package.py @@ -0,0 +1,216 @@ +################################################################################ +# Copyright (c) 2015 Krell Institute. All Rights Reserved. +# +# This program is free software; you can redistribute it and/or modify it under +# the terms of the GNU General Public License as published by the Free Software +# Foundation; either version 2 of the License, or (at your option) any later +# version. +# +# This program is distributed in the hope that it will be useful, but WITHOUT +# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS +# FOR A PARTICULAR PURPOSE. See the GNU General Public License for more +# details. +# +# You should have received a copy of the GNU General Public License along with +# this program; if not, write to the Free Software Foundation, Inc., 59 Temple +# Place, Suite 330, Boston, MA 02111-1307 USA +################################################################################ + +from spack import * + +class Openspeedshop(Package): + """OpenSpeedShop is a community effort by The Krell Institute with current direct funding from DOEs NNSA. + It builds on top of a broad list of community infrastructures, most notably Dyninst and MRNet from UW, + libmonitor from Rice, and PAPI from UTK. OpenSpeedShop is an open source multi platform Linux performance + tool which is targeted to support performance analysis of applications running on both single node and + large scale IA64, IA32, EM64T, AMD64, PPC, ARM, Blue Gene and Cray platforms. OpenSpeedShop development + is hosted by the Krell Institute. The infrastructure and base components of OpenSpeedShop are released + as open source code primarily under LGPL. + """ + + + homepage = "http://www.openspeedshop.org" + url = "http://sourceforge.net/projects/openss/files/openss/openspeedshop-2.2/openspeedshop-2.2.tar.gz/download" + version('2.2', '16cb051179c2038de4e8a845edf1d573') + + #homepage = "http://www.openspeedshop.org" + #url = "http://sourceforge.net/projects/openss/files/openss/openspeedshop-2.1/openspeedshop-2.1.tar.gz/download" + #version('2.1', 'bdaa57c1a0db9d0c3e0303fd8496c507') + + # optional mirror template + #url = "file:/g/g24/jeg/openspeedshop-2.1.tar.gz" + #version('2.1', '64ee17166519838c7b94a1adc138e94f') + + + + parallel = False + + variant('offline', default=True, description="build with offline instrumentor enabled.") + variant('cbtf', default=False, description="build with cbtf instrumentor enabled.") + variant('runtime', default=False, description="build only the runtime libraries and collectors.") + variant('frontend', default=False, description="build only the front-end tool using the runtime_dir to point to the target build.") + variant('cuda', default=False, description="build with cuda packages included.") + variant('ptgf', default=False, description="build with the PTGF based gui package enabled.") + variant('intelmic', default=False, description="build for the Intel MIC platform.") + variant('cray', default=False, description="build for Cray platforms.") + variant('bluegene', default=False, description="build for Cray platforms.") + variant('rtfe', default=False, description="build for generic cluster platforms that have different processors on the fe and be nodes.") + + # Dependencies for openspeedshop that are common to all the variants of the OpenSpeedShop build + depends_on("bison") + depends_on("flex") + depends_on("binutils@2.24+krellpatch") + depends_on("libelf") + depends_on("libdwarf") + depends_on("sqlite") + depends_on("boost@1.50.0") + depends_on("dyninst@8.2.1") + depends_on("python") + depends_on("qt@3.3.8b+krellpatch") + + # Dependencies only for the openspeedshop offline package. + depends_on("libunwind", when='+offline') + depends_on("papi", when='+offline') + depends_on("libmonitor+krellpatch", when='+offline') + #depends_on("openmpi+krelloptions", when='+offline') + #depends_on("openmpi", when='+offline') + #depends_on("mpich", when='+offline') + + # Dependencies only for the openspeedshop cbtf package. + depends_on("cbtf", when='+cbtf') + depends_on("cbtf-krell", when='+cbtf') + depends_on("cbtf-argonavis", when='+cbtf') + depends_on("mrnet@4.1.0:+lwthreads", when='+cbtf') + + def install(self, spec, prefix): + + #openmpi_prefix_path = "/opt/openmpi-1.8.2" + #mvapich_prefix_path = "/usr/local/tools/mvapich-gnu" + #'-DOPENMPI_DIR=%s' % spec['openmpi'].prefix, + #'-DOPENMPI_DIR=%s' % openmpi_prefix_path, + #'-DMVAPICH_DIR=%s' % mvapich_prefix_path, + + # FIXME: How do we make this dynamic in spack? That is, can we specify the paths to cuda dynamically? + # WAITING for external package support. + #if '+cuda' in spec: + # cuda_prefix_path = "/usr/local/cuda-6.0" + # cupti_prefix_path = "/usr/local/cuda-6.0/extras/CUPTI" + + if '+offline' in spec: + instrumentor_setting = "offline" + if '+runtime' in spec: + with working_dir('build_runtime', create=True): + cmake('..', + '-DCMAKE_INSTALL_PREFIX=%s' % prefix, + '-DCMAKE_LIBRARY_PATH=%s' % prefix.lib64, + '-DINSTRUMENTOR=%s' % instrumentor_setting, + '-DLIBMONITOR_DIR=%s' % spec['libmonitor'].prefix, + '-DLIBUNWIND_DIR=%s' % spec['libunwind'].prefix, + '-DPAPI_DIR=%s' % spec['papi'].prefix, + *std_cmake_args) + make("clean") + make() + make("install") + else: + cmake_prefix_path = join_path(spec['dyninst'].prefix) + with working_dir('build', create=True): + #python_vers=join_path(spec['python'].version[:2]) + #'-DOPENMPI_DIR=%s' % openmpi_prefix_path, + #'-DMVAPICH_DIR=%s' % mvapich_prefix_path, + python_vers='%d.%d' % spec['python'].version[:2] + cmake('..', + '-DCMAKE_INSTALL_PREFIX=%s' % prefix, + '-DCMAKE_LIBRARY_PATH=%s' % prefix.lib64, + '-DCMAKE_PREFIX_PATH=%s' % cmake_prefix_path, + '-DINSTRUMENTOR=%s' % instrumentor_setting, + '-DBINUTILS_DIR=%s' % spec['binutils'].prefix, + '-DLIBELF_DIR=%s' % spec['libelf'].prefix, + '-DLIBDWARF_DIR=%s' % spec['libdwarf'].prefix, + '-DLIBMONITOR_DIR=%s' % spec['libmonitor'].prefix, + '-DLIBUNWIND_DIR=%s' % spec['libunwind'].prefix, + '-DPAPI_DIR=%s' % spec['papi'].prefix, + '-DSQLITE3_DIR=%s' % spec['sqlite'].prefix, + '-DQTLIB_DIR=%s' % spec['qt'].prefix, + '-DPYTHON_EXECUTABLE=%s' % join_path(spec['python'].prefix + '/bin/python'), + '-DPYTHON_INCLUDE_DIR=%s' % join_path(spec['python'].prefix.include) + '/python' + python_vers, + '-DPYTHON_LIBRARY=%s' % join_path(spec['python'].prefix.lib) + '/libpython' + python_vers + '.so', + '-DBoost_NO_SYSTEM_PATHS=TRUE', + '-DBOOST_ROOT=%s' % spec['boost'].prefix, + '-DDYNINST_DIR=%s' % spec['dyninst'].prefix, + *std_cmake_args) + make("clean") + make() + make("install") + + elif '+cbtf' in spec: + instrumentor_setting = "cbtf" + cmake_prefix_path = join_path(spec['cbtf'].prefix) + ':' + join_path(spec['cbtf-krell'].prefix) + ':' + join_path(spec['dyninst'].prefix) + if '+runtime' in spec: + with working_dir('build_cbtf_runtime', create=True): + python_vers='%d.%d' % spec['python'].version[:2] + cmake('..', + '-DCMAKE_INSTALL_PREFIX=%s' % prefix, + '-DCMAKE_LIBRARY_PATH=%s' % prefix.lib64, + '-DCMAKE_PREFIX_PATH=%s' % cmake_prefix_path, + '-DINSTRUMENTOR=%s' % instrumentor_setting, + '-DBINUTILS_DIR=%s' % spec['binutils'].prefix, + '-DLIBELF_DIR=%s' % spec['libelf'].prefix, + '-DLIBDWARF_DIR=%s' % spec['libdwarf'].prefix, + '-DCBTF_DIR=%s' % spec['cbtf'].prefix, + '-DCBTF_KRELL_DIR=%s' % spec['cbtf-krell'].prefix, + '-DPYTHON_EXECUTABLE=%s' % join_path(spec['python'].prefix + '/bin/python'), + '-DPYTHON_INCLUDE_DIR=%s' % join_path(spec['python'].prefix.include) + '/python' + python_vers, + '-DPYTHON_LIBRARY=%s' % join_path(spec['python'].prefix.lib) + '/libpython' + python_vers + '.so', + '-DBoost_NO_SYSTEM_PATHS=TRUE', + '-DBOOST_ROOT=%s' % spec['boost'].prefix, + '-DDYNINST_DIR=%s' % spec['dyninst'].prefix, + '-DMRNET_DIR=%s' % spec['mrnet'].prefix, + *std_cmake_args) + make("clean") + make() + make("install") + + else: + with working_dir('build_cbtf', create=True): + python_vers='%d.%d' % spec['python'].version[:2] + #python_vers=join_path(spec['python'].version[:2]) + cmake('..', + '-DCMAKE_INSTALL_PREFIX=%s' % prefix, + '-DCMAKE_LIBRARY_PATH=%s' % prefix.lib64, + '-DCMAKE_PREFIX_PATH=%s' % cmake_prefix_path, + '-DINSTRUMENTOR=%s' % instrumentor_setting, + '-DBINUTILS_DIR=%s' % spec['binutils'].prefix, + '-DLIBELF_DIR=%s' % spec['libelf'].prefix, + '-DLIBDWARF_DIR=%s' % spec['libdwarf'].prefix, + '-DSQLITE3_DIR=%s' % spec['sqlite'].prefix, + '-DCBTF_DIR=%s' % spec['cbtf'].prefix, + '-DCBTF_KRELL_DIR=%s' % spec['cbtf-krell'].prefix, + '-DQTLIB_DIR=%s' % spec['qt'].prefix, + '-DPYTHON_EXECUTABLE=%s' % join_path(spec['python'].prefix + '/bin/python'), + '-DPYTHON_INCLUDE_DIR=%s' % join_path(spec['python'].prefix.include) + '/python' + python_vers, + '-DPYTHON_LIBRARY=%s' % join_path(spec['python'].prefix.lib) + '/libpython' + python_vers + '.so', + '-DBoost_NO_SYSTEM_PATHS=TRUE', + '-DBOOST_ROOT=%s' % spec['boost'].prefix, + '-DDYNINST_DIR=%s' % spec['dyninst'].prefix, + '-DMRNET_DIR=%s' % spec['mrnet'].prefix, + *std_cmake_args) + make("clean") + make() + make("install") + + #if '+frontend' in spec: + # with working_dir('build_frontend', create=True): + # tbd + + + #if '+intelmic' in spec: + # with working_dir('build_intelmic_compute', create=True): + # tbd + # with working_dir('build_intelmic_frontend', create=True): + # tbd + + #if '+cray' in spec: + # with working_dir('build_cray_compute', create=True): + # tbd + # with working_dir('build_cray_frontend', create=True): + # tbd diff --git a/var/spack/packages/otf2/package.py b/var/spack/packages/otf2/package.py index fa0a5898b6..b3d3a5b663 100644 --- a/var/spack/packages/otf2/package.py +++ b/var/spack/packages/otf2/package.py @@ -11,6 +11,10 @@ class Otf2(Package): homepage = "http://www.vi-hps.org/score-p" url = "http://www.vi-hps.org/upload/packages/otf2/otf2-1.4.tar.gz" + version('2.0', '5b546188b25bc1c4e285e06dddf75dfc', + url="http://www.vi-hps.org/upload/packages/otf2/otf2-2.0.tar.gz") + version('1.5.1', '16a9df46e0da78e374f5d12c8cdc1109', + url='http://www.vi-hps.org/upload/packages/otf2/otf2-1.5.1.tar.gz') version('1.4', 'a23c42e936eb9209c4e08b61c3cf5092', url="http://www.vi-hps.org/upload/packages/otf2/otf2-1.4.tar.gz") version('1.3.1', 'd0ffc4e858455ace4f596f910e68c9f2', diff --git a/var/spack/packages/papi/package.py b/var/spack/packages/papi/package.py index 097b8c41ec..910e0aa9f9 100644 --- a/var/spack/packages/papi/package.py +++ b/var/spack/packages/papi/package.py @@ -11,8 +11,8 @@ class Papi(Package): components that expose performance measurement opportunites across the hardware and software stack.""" homepage = "http://icl.cs.utk.edu/papi/index.html" - url = "http://icl.cs.utk.edu/projects/papi/downloads/papi-5.3.0.tar.gz" + url = "http://icl.cs.utk.edu/projects/papi/downloads/papi-5.4.1.tar.gz" version('5.4.1', '9134a99219c79767a11463a76b0b01a2') version('5.3.0', '367961dd0ab426e5ae367c2713924ffb') diff --git a/var/spack/packages/pdt/package.py b/var/spack/packages/pdt/package.py new file mode 100644 index 0000000000..ce3b793e30 --- /dev/null +++ b/var/spack/packages/pdt/package.py @@ -0,0 +1,45 @@ +############################################################################## +# Copyright (c) 2013, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU General Public License (as published by +# the Free Software Foundation) version 2.1 dated February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public License +# along with this program; if not, write to the Free Software Foundation, +# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## + +from spack import * + + +class Pdt(Package): + """ + Program Database Toolkit (PDT) is a framework for analyzing source code written in several programming languages + and for making rich program knowledge accessible to developers of static and dynamic analysis tools. PDT implements + a standard program representation, the program database (PDB), that can be accessed in a uniform way through a + class library supporting common PDB operations. + """ + homepage = "https://www.cs.uoregon.edu/research/pdt/home.php" + url = "https://www.cs.uoregon.edu/research/tau/pdt_releases/pdt-3.21.tar.gz" + + version('3.21', '8df94298b71703decf680709a4ddf68f') + version('3.19', 'ba5591994998771fdab216699e362228') + + def install(self, spec, prefix): + configure('-prefix=%s' % prefix) + make() + make("install") diff --git a/var/spack/packages/py-cffi/package.py b/var/spack/packages/py-cffi/package.py index a4d37483fe..909049a67c 100644 --- a/var/spack/packages/py-cffi/package.py +++ b/var/spack/packages/py-cffi/package.py @@ -4,7 +4,7 @@ class PyCffi(Package): """Foreign Function Interface for Python calling C code""" homepage = "http://cffi.readthedocs.org/en/latest/" # base https://pypi.python.org/pypi/cffi - url = "https://pypi.python.org/packages/source/c/cffi/cffi-1.1.2.tar.gz#md5=" + url = "https://pypi.python.org/packages/source/c/cffi/cffi-1.1.2.tar.gz" version('1.1.2', 'ca6e6c45b45caa87aee9adc7c796eaea') diff --git a/var/spack/packages/python/package.py b/var/spack/packages/python/package.py index 31fb8b3d5a..12b282910b 100644 --- a/var/spack/packages/python/package.py +++ b/var/spack/packages/python/package.py @@ -2,6 +2,7 @@ import os import re from contextlib import closing from llnl.util.lang import match_predicate +from spack.util.environment import * from spack import * import spack @@ -16,22 +17,33 @@ class Python(Package): version('2.7.8', 'd235bdfa75b8396942e360a70487ee00') version('2.7.10', 'c685ef0b8e9f27b5e3db5db12b268ac6') + version('3.5.0', 'd149d2812f10cbe04c042232e7964171') depends_on("openssl") depends_on("bzip2") depends_on("readline") depends_on("ncurses") depends_on("sqlite") + depends_on("zlib") def install(self, spec, prefix): # Need this to allow python build to find the Python installation. env['PYTHONHOME'] = prefix env['MACOSX_DEPLOYMENT_TARGET'] = '10.6' - # Rest of install is pretty standard. + # Rest of install is pretty standard except setup.py needs to be able to read the CPPFLAGS + # and LDFLAGS as it scans for the library and headers to build configure("--prefix=%s" % prefix, "--with-threads", - "--enable-shared") + "--enable-shared", + "CPPFLAGS=-I%s/include -I%s/include -I%s/include -I%s/include -I%s/include -I%s/include" % ( + spec['openssl'].prefix, spec['bzip2'].prefix, + spec['readline'].prefix, spec['ncurses'].prefix, + spec['sqlite'].prefix, spec['zlib'].prefix), + "LDFLAGS=-L%s/lib -L%s/lib -L%s/lib -L%s/lib -L%s/lib -L%s/lib" % ( + spec['openssl'].prefix, spec['bzip2'].prefix, + spec['readline'].prefix, spec['ncurses'].prefix, + spec['sqlite'].prefix, spec['zlib'].prefix)) make() make("install") @@ -63,7 +75,10 @@ class Python(Package): python('setup.py', 'install', '--prefix=%s' % prefix) """ # Python extension builds can have a global python executable function - module.python = Executable(join_path(spec.prefix.bin, 'python')) + if self.version >= Version("3.0.0") and self.version < Version("4.0.0"): + module.python = Executable(join_path(spec.prefix.bin, 'python3')) + else: + module.python = Executable(join_path(spec.prefix.bin, 'python')) # Add variables for lib/pythonX.Y and lib/pythonX.Y/site-packages dirs. module.python_lib_dir = os.path.join(ext_spec.prefix, self.python_lib_dir) diff --git a/var/spack/packages/qt/package.py b/var/spack/packages/qt/package.py index 0e4abe3b1d..e8d843519d 100644 --- a/var/spack/packages/qt/package.py +++ b/var/spack/packages/qt/package.py @@ -10,14 +10,23 @@ class Qt(Package): version('5.4.0', 'e8654e4b37dd98039ba20da7a53877e6', url='http://download.qt-project.org/official_releases/qt/5.4/5.4.0/single/qt-everywhere-opensource-src-5.4.0.tar.gz') + version('5.3.2', 'febb001129927a70174467ecb508a682', url='http://download.qt.io/archive/qt/5.3/5.3.2/single/qt-everywhere-opensource-src-5.3.2.tar.gz') version('5.2.1', 'a78408c887c04c34ce615da690e0b4c8', url='http://download.qt.io/archive/qt/5.2/5.2.1/single/qt-everywhere-opensource-src-5.2.1.tar.gz') + version('4.8.6', '2edbe4d6c2eff33ef91732602f3518eb', url="http://download.qt-project.org/official_releases/qt/4.8/4.8.6/qt-everywhere-opensource-src-4.8.6.tar.gz") + version('3.3.8b', '9f05b4125cfe477cc52c9742c3c09009', + url="http://download.qt.io/archive/qt/3/qt-x11-free-3.3.8b.tar.gz") + + # Add patch for compile issues with qt3 found with use in the OpenSpeedShop project + variant('krellpatch', default=False, description="build with openspeedshop based patch.") + patch('qt3krell.patch', when='@3.3.8b+krellpatch') + # Use system openssl for security. #depends_on("openssl") @@ -25,7 +34,7 @@ class Qt(Package): depends_on("gtkplus") depends_on("libxml2") depends_on("zlib") - depends_on("dbus") + depends_on("dbus", when='@4:') depends_on("libtiff") depends_on("libpng") depends_on("libmng") @@ -39,7 +48,7 @@ class Qt(Package): # depends_on("icu4c") # OpenGL hardware acceleration - depends_on("mesa") + depends_on("mesa", when='@4:') depends_on("libxcb") @@ -85,6 +94,15 @@ class Qt(Package): # Don't disable all the database drivers, but should # really get them into spack at some point. + @when('@3') + def configure(self): + configure('-prefix', self.prefix, + '-v', + '-thread', + '-shared', + '-release', + '-fast' + ) @when('@4') def configure(self): diff --git a/var/spack/packages/qt/qt3krell.patch b/var/spack/packages/qt/qt3krell.patch new file mode 100644 index 0000000000..3333eeacd4 --- /dev/null +++ b/var/spack/packages/qt/qt3krell.patch @@ -0,0 +1,68 @@ +--- qt-x11-free-3.3.8b/src/tools/qmap.h 2008-01-15 13:09:13.000000000 -0600 ++++ qt-x11-free-3.3.8b-fixes/src/tools/qmap.h 2015-07-08 15:47:34.757565247 -0500 +@@ -52,6 +52,7 @@ + #ifndef QT_NO_STL + #include <iterator> + #include <map> ++#include <cstddef> + #endif + + //#define QT_CHECK_MAP_RANGE +--- qt-x11-free-3.3.8b/src/tools/qvaluelist.h 2008-01-15 13:09:13.000000000 -0600 ++++ qt-x11-free-3.3.8b-fixes/src/tools/qvaluelist.h 2015-07-08 15:47:34.758565247 -0500 +@@ -50,6 +50,7 @@ + #ifndef QT_NO_STL + #include <iterator> + #include <list> ++#include <cstddef> + #endif + + //#define QT_CHECK_VALUELIST_RANGE +--- qt-x11-free-3.3.8b/src/tools/qvaluevector.h 2008-01-15 13:09:13.000000000 -0600 ++++ qt-x11-free-3.3.8b-fixes/src/tools/qvaluevector.h 2015-07-08 15:47:34.758565247 -0500 +@@ -47,6 +47,7 @@ + + #ifndef QT_NO_STL + #include <vector> ++#include <cstddef> + #endif + + template <class T> +--- qt-x11-free-3.3.8b/configure 2008-01-15 13:09:15.000000000 -0600 ++++ qt-x11-free-3.3.8b-fixes/configure 2015-07-08 15:49:03.379560633 -0500 +@@ -2339,7 +2339,7 @@ + else + echo "Do you accept the terms of the $TheLicense? \c" + fi +- read acceptance ++ acceptance=yes + echo + if [ "$acceptance" = yes ]; then + break +@@ -2397,7 +2397,7 @@ + else + echo "Do you accept the terms of $affix license? \c" + fi +- read acceptance ++ acceptance=yes + echo + if [ "$acceptance" = "yes" ]; then + break +@@ -2443,7 +2443,7 @@ + else + echo "Do you accept the terms of the license? \c" + fi +- read acceptance ++ acceptance=yes + echo + if [ "$acceptance" = "yes" ]; then + break +@@ -2524,7 +2524,7 @@ + else + echo "Do you accept the terms of the $Platform License? \c" + fi +- read acceptance ++ acceptance=yes + echo + if [ "$acceptance" = "yes" ]; then + break diff --git a/var/spack/packages/scorep/package.py b/var/spack/packages/scorep/package.py index f013bd1cbb..0820f2d8ac 100644 --- a/var/spack/packages/scorep/package.py +++ b/var/spack/packages/scorep/package.py @@ -1,74 +1,80 @@ -# FIXME: Add copyright statement +############################################################################## +# Copyright (c) 2013, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU General Public License (as published by +# the Free Software Foundation) version 2.1 dated February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public License +# along with this program; if not, write to the Free Software Foundation, +# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## from spack import * + class Scorep(Package): - """The Score-P measurement infrastructure is a highly scalable and + """ + The Score-P measurement infrastructure is a highly scalable and easy-to-use tool suite for profiling, event tracing, and online analysis of HPC applications.""" - # FIXME: add a proper url for your package's homepage here. homepage = "http://www.vi-hps.org/projects/score-p" url = "http://www.vi-hps.org/upload/packages/scorep/scorep-1.2.3.tar.gz" + version('1.4.2', '3b9a042b13bdd5836452354e6567f71e', + url='http://www.vi-hps.org/upload/packages/scorep/scorep-1.4.2.tar.gz') version('1.3', '9db6f957b7f51fa01377a9537867a55c', - url = 'http://www.vi-hps.org/upload/packages/scorep/scorep-1.3.tar.gz') + url='http://www.vi-hps.org/upload/packages/scorep/scorep-1.3.tar.gz') - version('1.2.3', '4978084e7cbd05b94517aa8beaea0817') + ########## + # Dependencies for SCORE-P are quite tight. See the homepage for more information. + # SCOREP 1.4.2 + depends_on('otf2@1.5:1.6', when='@1.4.2') + depends_on('opari2@1.1.4', when='@1.4.2') + depends_on('cube@4.3:4.4', when='@1.4.2') + # SCOREP 1.3 + depends_on("otf2@1.4", when='@1.3') + depends_on("opari2@1.1.4", when='@1.3') + depends_on("cube@4.2.3", when='@1.3') + ########## depends_on("mpi") depends_on("papi") - # depends_on("otf2@1.2:1.2.1") # only Score-P 1.2.x - depends_on("otf2") - depends_on("opari2") - depends_on("cube@4.2:4.2.3") - backend_user_provided = """\ -CC=cc -CXX=c++ -F77=f77 -FC=f90 -CFLAGS=-fPIC -CXXFLAGS=-fPIC -""" - frontend_user_provided = """\ -CC_FOR_BUILD=cc -CXX_FOR_BUILD=c++ -F77_FOR_BUILD=f70 -FC_FOR_BUILD=f90 -CFLAGS_FOR_BUILD=-fPIC -CXXFLAGS_FOR_BUILD=-fPIC -""" - mpi_user_provided = """\ -MPICC=mpicc -MPICXX=mpicxx -MPIF77=mpif77 -MPIFC=mpif90 -MPI_CFLAGS=-fPIC -MPI_CXXFLAGS=-fPIC -""" + def get_compiler_config_line(self): + backend_user_provided = ['CC=%s' % self.compiler.cc_names[0], + 'CXX=%s' % self.compiler.cxx_names[0], + 'F77=%s' % self.compiler.f77_names[0] if len(self.compiler.f77_names) else "", + 'FC=%s' % self.compiler.fc_names[0] if len(self.compiler.fc_names) else "", + 'CFLAGS=-fPIC %s' % self.rpath_args, + 'CXXFLAGS=-fPIC %s'% self.rpath_args] + return backend_user_provided def install(self, spec, prefix): - # Use a custom compiler configuration, otherwise the score-p - # build system messes with spack's compiler settings. - # Create these three files in the build directory - with open("platform-backend-user-provided", "w") as backend_file: - backend_file.write(self.backend_user_provided) - with open("platform-frontend-user-provided", "w") as frontend_file: - frontend_file.write(self.frontend_user_provided) - with open("platform-mpi-user-provided", "w") as mpi_file: - mpi_file.write(self.mpi_user_provided) - - configure_args = ["--prefix=%s" % prefix, - "--with-custom-compilers", - "--with-otf2=%s" % spec['otf2'].prefix.bin, - "--with-opari2=%s" % spec['opari2'].prefix.bin, - "--with-cube=%s" % spec['cube'].prefix.bin, - "--with-papi-header=%s" % spec['papi'].prefix.include, - "--with-papi-lib=%s" % spec['papi'].prefix.lib, - "--enable-shared"] - - configure(*configure_args) - - make() - make("install") + configure = Executable( join_path(self.stage.source_path, 'configure') ) + with working_dir('spack-build', create=True): + configure_args = ["--prefix=%s" % prefix, + "--with-otf2=%s" % spec['otf2'].prefix.bin, + "--with-opari2=%s" % spec['opari2'].prefix.bin, + "--with-cube=%s" % spec['cube'].prefix.bin, + "--with-papi-header=%s" % spec['papi'].prefix.include, + "--with-papi-lib=%s" % spec['papi'].prefix.lib, + "--enable-shared"] + configure_args.extend(self.get_compiler_config_line()) + configure(*configure_args) + make() + make("install") diff --git a/var/spack/packages/scotch/package.py b/var/spack/packages/scotch/package.py index 79289ff2ad..8229ed8686 100644 --- a/var/spack/packages/scotch/package.py +++ b/var/spack/packages/scotch/package.py @@ -1,5 +1,4 @@ from spack import * -import glob import os class Scotch(Package): @@ -11,28 +10,115 @@ class Scotch(Package): version('6.0.3', '10b0cc0f184de2de99859eafaca83cfc') - depends_on('mpi') + variant('mpi', default=False, description='Activate the compilation of PT-Scotch') + variant('compression', default=True, description='Activate the posibility to use compressed files') + variant('esmumps', default=False, description='Activate the compilation of the lib esmumps needed by mumps') + variant('shared', default=True, description='Build shared libraries') + depends_on('mpi', when='+mpi') + depends_on('zlib', when='+compression') + depends_on('flex') + depends_on('bison') + + def compiler_specifics(self, makefile_inc, defines): + if self.compiler.name == 'gcc': + defines.append('-Drestrict=__restrict') + elif self.compiler.name == 'intel': + defines.append('-restrict') + + makefile_inc.append('CCS = $(CC)') + + if '+mpi' in self.spec: + makefile_inc.extend([ + 'CCP = %s' % os.path.join(self.spec['mpi'].prefix.bin, 'mpicc'), + 'CCD = $(CCP)' + ]) + else: + makefile_inc.extend([ + 'CCP = mpicc', # It is set but not used + 'CCD = $(CCS)' + ]) + + + + def library_build_type(self, makefile_inc, defines): + makefile_inc.extend([ + 'LIB = .a', + 'CLIBFLAGS = ', + 'RANLIB = ranlib', + 'AR = ar', + 'ARFLAGS = -ruv ' + ]) + + @when('+shared') + def library_build_type(self, makefile_inc, defines): + makefile_inc.extend([ + 'LIB = .so', + 'CLIBFLAGS = -shared -fPIC', + 'RANLIB = echo', + 'AR = $(CC)', + 'ARFLAGS = -shared $(LDFLAGS) -o' + ]) + + def extra_features(self, makefile_inc, defines): + ldflags = [] + + if '+compression' in self.spec: + defines.append('-DCOMMON_FILE_COMPRESS_GZ') + ldflags.append('-L%s -lz' % (self.spec['zlib'].prefix.lib)) + + defines.append('-DCOMMON_PTHREAD') + ldflags.append('-lm -lrt -pthread') + + makefile_inc.append('LDFLAGS = %s' % ' '.join(ldflags)) def patch(self): - with working_dir('src/Make.inc'): - makefiles = glob.glob('Makefile.inc.x86-64_pc_linux2*') - filter_file(r'^CCS\s*=.*$', 'CCS = cc', *makefiles) - filter_file(r'^CCD\s*=.*$', 'CCD = cc', *makefiles) + makefile_inc = [] + defines = [ + '-DCOMMON_RANDOM_FIXED_SEED', + '-DSCOTCH_DETERMINISTIC', + '-DSCOTCH_RENAME', + '-DIDXSIZE64' ] + self.library_build_type(makefile_inc, defines) + self.compiler_specifics(makefile_inc, defines) + self.extra_features(makefile_inc, defines) + makefile_inc.extend([ + 'EXE =', + 'OBJ = .o', + 'MAKE = make', + 'CAT = cat', + 'LN = ln', + 'MKDIR = mkdir', + 'MV = mv', + 'CP = cp', + 'CFLAGS = -O3 %s' % (' '.join(defines)), + 'LEX = %s -Pscotchyy -olex.yy.c' % os.path.join(self.spec['flex'].prefix.bin , 'flex'), + 'YACC = %s -pscotchyy -y -b y' % os.path.join(self.spec['bison'].prefix.bin, 'bison'), + 'prefix = %s' % self.prefix, + '' + ]) + + with working_dir('src'): + with open('Makefile.inc', 'w') as fh: + fh.write('\n'.join(makefile_inc)) + def install(self, spec, prefix): - # Currently support gcc and icc on x86_64 (maybe others with - # vanilla makefile) - makefile = 'Make.inc/Makefile.inc.x86-64_pc_linux2' - if spec.satisfies('%icc'): - makefile += '.icc' + targets = ['scotch'] + if '+mpi' in self.spec: + targets.append('ptscotch') + + if '+esmumps' in self.spec: + targets.append('esmumps') + if '+mpi' in self.spec: + targets.append('ptesmumps') with working_dir('src'): - force_symlink(makefile, 'Makefile.inc') - for app in ('scotch', 'ptscotch'): - make(app) + for app in targets: + make(app, parallel=(not app=='ptesmumps')) + install_tree('bin', prefix.bin) install_tree('lib', prefix.lib) install_tree('include', prefix.include) diff --git a/var/spack/packages/spot/package.py b/var/spack/packages/spot/package.py new file mode 100644 index 0000000000..9e539277ae --- /dev/null +++ b/var/spack/packages/spot/package.py @@ -0,0 +1,18 @@ +from spack import * +import os + +class Spot(Package): + """Spot is a C++11 library for omega-automata manipulation and model checking.""" + homepage = "https://spot.lrde.epita.fr/index.html" + url = "http://www.lrde.epita.fr/dload/spot/spot-1.99.3.tar.gz" + + version('1.99.3', 'd53adcb2d0fe7c69f45d4e595a58254e') + + #depends_on("gcc@4.8:") + depends_on("python@3.2:") + + def install(self, spec, prefix): + configure('--prefix=%s' % prefix) + + make() + make("install") diff --git a/var/spack/packages/tau/package.py b/var/spack/packages/tau/package.py index 048fac80aa..31492397d8 100644 --- a/var/spack/packages/tau/package.py +++ b/var/spack/packages/tau/package.py @@ -1,32 +1,135 @@ +############################################################################## +# Copyright (c) 2013, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU General Public License (as published by +# the Free Software Foundation) version 2.1 dated February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public License +# along with this program; if not, write to the Free Software Foundation, +# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## + from spack import * import os +import os.path + from llnl.util.filesystem import join_path class Tau(Package): - """A portable profiling and tracing toolkit for performance - analysis of parallel programs written in Fortran, C, C++, UPC, - Java, Python.""" + """ + A portable profiling and tracing toolkit for performance + analysis of parallel programs written in Fortran, C, C++, UPC, + Java, Python. + """ homepage = "http://www.cs.uoregon.edu/research/tau" - url = "http://www.cs.uoregon.edu/research/paracomp/tau/tauprofile/dist/tau-2.23.1.tar.gz" + url = "https://www.cs.uoregon.edu/research/tau/tau_releases/tau-2.25.tar.gz" + version('2.25', '46cd48fa3f3c4ce0197017b3158a2b43') + version('2.24.1', '6635ece6d1f08215b02f5d0b3c1e971b') + version('2.24', '57ce33539c187f2e5ec68f0367c76db4') version('2.23.1', '6593b47ae1e7a838e632652f0426fe72') + # TODO : shmem variant missing + variant('download', default=False, description='Downloads and builds various dependencies') + variant('scorep', default=False, description='Activates SCOREP support') + variant('openmp', default=True, description='Use OpenMP threads') + variant('mpi', default=True, description='Specify use of TAU MPI wrapper library') + variant('phase', default=True, description='Generate phase based profiles') + variant('comm', default=True, description=' Generate profiles with MPI communicator info') + + # TODO : Try to build direct OTF2 support? Some parts of the OTF support library in TAU are non-conformant, + # TODO : and fail at compile-time. Further, SCOREP is compiled with OTF2 support. + depends_on('pdt') # Required for TAU instrumentation + depends_on('scorep', when='+scorep') + depends_on('binutils', when='~download') + depends_on('mpi', when='+mpi') + + def set_compiler_options(self): + + useropt = ["-O2", self.rpath_args] + + ########## + # Selecting a compiler with TAU configure is quite tricky: + # 1 - compilers are mapped to a given set of strings (and spack cc, cxx, etc. wrappers are not among them) + # 2 - absolute paths are not allowed + # 3 - the usual environment variables seems not to be checked ('CC', 'CXX' and 'FC') + # 4 - if no -cc=<compiler> -cxx=<compiler> is passed tau is built with system compiler silently + # (regardless of what %<compiler> is used in the spec) + # + # In the following we give TAU what he expects and put compilers into PATH + compiler_path = os.path.dirname(self.compiler.cc) + os.environ['PATH'] = ':'.join([compiler_path, os.environ['PATH']]) + compiler_options = ['-c++=%s' % self.compiler.cxx_names[0], + '-cc=%s' % self.compiler.cc_names[0]] + if self.compiler.fc: + compiler_options.append('-fortran=%s' % self.compiler.fc_names[0]) + ########## + + # Construct the string of custom compiler flags and append it to compiler related options + useropt = ' '.join(useropt) + useropt = "-useropt=%s" % useropt + compiler_options.append(useropt) + return compiler_options + def install(self, spec, prefix): # TAU isn't happy with directories that have '@' in the path. Sigh. change_sed_delimiter('@', ';', 'configure') change_sed_delimiter('@', ';', 'utils/FixMakefile') change_sed_delimiter('@', ';', 'utils/FixMakefile.sed.default') - # After that, it's relatively standard. - configure("-prefix=%s" % prefix) + # TAU configure, despite the name , seems to be a manually written script (nothing related to autotools). + # As such it has a few #peculiarities# that make this build quite hackish. + options = ["-prefix=%s" % prefix, + "-iowrapper", + "-pdt=%s" % spec['pdt'].prefix] + # If download is active, download and build suggested dependencies + if '+download' in spec: + options.extend(['-bfd=download', + '-unwind=download', + '-asmdex=download']) + else: + options.extend(["-bfd=%s" % spec['binutils'].prefix]) + # TODO : unwind and asmdex are still missing + + if '+scorep' in spec: + options.append("-scorep=%s" % spec['scorep'].prefix) + + if '+openmp' in spec: + options.append('-openmp') + + if '+mpi' in spec: + options.append('-mpi') + + if '+phase' in spec: + options.append('-PROFILEPHASE') + + if '+comm' in spec: + options.append('-PROFILECOMMUNICATORS') + + compiler_specific_options = self.set_compiler_options() + options.extend(compiler_specific_options) + configure(*options) make("install") # Link arch-specific directories into prefix since there is # only one arch per prefix the way spack installs. self.link_tau_arch_dirs() - def link_tau_arch_dirs(self): for subdir in os.listdir(self.prefix): for d in ('bin', 'lib'): diff --git a/var/spack/packages/tmuxinator/package.py b/var/spack/packages/tmuxinator/package.py index 26c061cbd6..77ae063e5d 100644 --- a/var/spack/packages/tmuxinator/package.py +++ b/var/spack/packages/tmuxinator/package.py @@ -5,7 +5,7 @@ class Tmuxinator(Package): homepage = "https://github.com/tmuxinator/tmuxinator" url = "https://github.com/tmuxinator/tmuxinator" - version('0.6.11', + version('0.6.11', git='https://github.com/tmuxinator/tmuxinator', tag='v0.6.11') @@ -13,5 +13,4 @@ class Tmuxinator(Package): def install(self, spec, prefix): gem('build', 'tmuxinator.gemspec') - gem('install', 'tmuxinator-{}.gem'.format(self.version)) - + gem('install', 'tmuxinator-{0}.gem'.format(self.version)) diff --git a/var/spack/packages/xerces-c/package.py b/var/spack/packages/xerces-c/package.py new file mode 100644 index 0000000000..b59ab178ae --- /dev/null +++ b/var/spack/packages/xerces-c/package.py @@ -0,0 +1,36 @@ +# FIXME: +# This is a template package file for Spack. We've conveniently +# put "FIXME" labels next to all the things you'll want to change. +# +# Once you've edited all the FIXME's, delete this whole message, +# save this file, and test out your package like this: +# +# spack install xerces-c +# +# You can always get back here to change things with: +# +# spack edit xerces-c +# +# See the spack documentation for more information on building +# packages. +# +from spack import * + +class XercesC(Package): + """ Xerces-C++ is a validating XML parser written in a portable subset of C++. + Xerces-C++ makes it easy to give your application the ability to read and + write XML data. A shared library is provided for parsing, generating, + manipulating, and validating XML documents using the DOM, SAX, and SAX2 APIs. + """ + + homepage = "https://xerces.apache.org/xerces-c" + url = "https://www.apache.org/dist/xerces/c/3/sources/xerces-c-3.1.2.tar.gz" + version('3.1.2', '9eb1048939e88d6a7232c67569b23985') + + def install(self, spec, prefix): + configure("--prefix=%s" % prefix, + "--disable-network") + make("clean") + make() + make("install") + |