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| author | Yifan Zhu <ifanzhu@foxmail.com> | 2018-05-12 18:38:22 -0500 |
|---|---|---|
| committer | Adam J. Stewart <ajstewart426@gmail.com> | 2018-05-12 18:38:22 -0500 |
| commit | 8270344042d89f4c0b789dfeead991d30c701787 (patch) | |
| tree | 9237e12237db342eb10df3d797c76d3371952faf /var | |
| parent | 8dd5ac357cc2f62770effc377c640c76f0acf0df (diff) | |
| download | spack-8270344042d89f4c0b789dfeead991d30c701787.tar.gz spack-8270344042d89f4c0b789dfeead991d30c701787.tar.bz2 spack-8270344042d89f4c0b789dfeead991d30c701787.tar.xz spack-8270344042d89f4c0b789dfeead991d30c701787.zip | |
plink: new source version 1.9-beta5 (#8076)
* plink: new source version 1.9-beta5
* plink: replace version 1.9 with 1.07
Diffstat (limited to 'var')
| -rw-r--r-- | var/spack/repos/builtin/packages/plink/package.py | 20 |
1 files changed, 16 insertions, 4 deletions
diff --git a/var/spack/repos/builtin/packages/plink/package.py b/var/spack/repos/builtin/packages/plink/package.py index 2ebc7a0242..7a6c47d47c 100644 --- a/var/spack/repos/builtin/packages/plink/package.py +++ b/var/spack/repos/builtin/packages/plink/package.py @@ -32,10 +32,22 @@ class Plink(Package): homepage = "https://www.cog-genomics.org/plink/1.9/" - version('1.9', 'a2325881594856c0f1b7523290d1e04f', - url='https://www.cog-genomics.org/static/bin/plink170815/plink_linux_x86_64.zip') + version('1.9-beta5', '737545504ae19348a44a05fa69b75c28', + url='https://github.com/chrchang/plink-ng/archive/b15c19f.tar.gz') + version('1.07', 'fd0bafeda42151b20534e4f97b0d97df', + url='http://zzz.bwh.harvard.edu/plink/dist/plink-1.07-x86_64.zip', + preferred=True) + + depends_on('atlas', when='@1.9-beta5') + depends_on('netlib-lapack', when='@1.9-beta5') def install(self, spec, prefix): mkdirp(prefix.bin) - install('plink', prefix.bin) - install('prettify', prefix.bin) + if spec.version == Version('1.07'): + install('plink', prefix.bin) + install('gPLINK.jar', prefix.bin) + if spec.version == Version('1.9-beta5'): + with working_dir('1.9'): + first_compile = Executable('./plink_first_compile') + first_compile() + install('plink', prefix.bin) |