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author | Miles Perry <37849532+Miles-Perry@users.noreply.github.com> | 2018-09-03 20:58:49 -0500 |
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committer | Adam J. Stewart <ajstewart426@gmail.com> | 2018-09-03 20:58:49 -0500 |
commit | cb9e8eda8fc1c37816777377f828377c194f59aa (patch) | |
tree | 77763f27b3dd731566f681629bd7376da488291b /var | |
parent | ee14d273e53736c6eeafcabe751d3d8ea274ef11 (diff) | |
download | spack-cb9e8eda8fc1c37816777377f828377c194f59aa.tar.gz spack-cb9e8eda8fc1c37816777377f828377c194f59aa.tar.bz2 spack-cb9e8eda8fc1c37816777377f828377c194f59aa.tar.xz spack-cb9e8eda8fc1c37816777377f828377c194f59aa.zip |
Feature/py picrust New Package (#9096)
* added py-picrust
* flake8 edits
* fixed boilerplate, added type='build', 'run'
* fixed errors
* added deps
* fixed error
* fixed numpy max version
* fixed future version
* fixed version issues
Diffstat (limited to 'var')
-rw-r--r-- | var/spack/repos/builtin/packages/py-picrust/package.py | 42 |
1 files changed, 42 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/py-picrust/package.py b/var/spack/repos/builtin/packages/py-picrust/package.py new file mode 100644 index 0000000000..dff2e89619 --- /dev/null +++ b/var/spack/repos/builtin/packages/py-picrust/package.py @@ -0,0 +1,42 @@ +############################################################################## +# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/spack/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class PyPicrust(PythonPackage): + """bioinformatics software package designed to predict metagenome + functional content from marker gene surveys and full genomes.""" + + homepage = "http://picrust.github.io/picrust/index.html" + url = "https://github.com/picrust/picrust/releases/download/v1.1.3/picrust-1.1.3.tar.gz" + + version('1.1.3', sha256='7538c8544899b8855deb73a2d7a4ccac4808ff294e161530a8c8762d472d8906') + + depends_on('python@2.7.15:2.999', type=('build', 'run')) + depends_on('py-cogent@1.5.3', type=('build', 'run')) + depends_on('py-biom-format@2.1.4:2.1.999', type=('build', 'run')) + depends_on('py-setuptools', type='build') + depends_on('py-future@0.16.0', type=('build', 'run')) + depends_on('py-numpy@1.5.1:', type=('build', 'run')) |