py-quast: Create new package (#7254)

1 files changed, 49 insertions, 0 deletions

diff --git a/var/spack/repos/builtin/packages/py-quast/package.py b/var/spack/repos/builtin/packages/py-quast/package.py
new file mode 100644
index 0000000000..e17c2f9061
--- /dev/null
+++ b/var/spack/repos/builtin/packages/py-quast/package.py
@@ -0,0 +1,49 @@
+##############################################################################
+# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/spack/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class PyQuast(PythonPackage):
+    """Quality Assessment Tool for Genome Assemblies"""
+
+    homepage = "http://cab.spbu.ru/software/quast"
+    url      = "https://github.com/ablab/quast/archive/quast_4.6.1.tar.gz"
+
+    version('4.6.3', '16d77acb2e0f6436b58d9df7b732fb76')
+    version('4.6.1', '37ccd34e0040c17aa6f990353a92475c')
+    version('4.6.0', 'c04d62c50ec4d9caa9d7388950b8d144')
+
+    depends_on('boost@1.56.0')
+    depends_on('perl@5.6.0:')
+    depends_on('python@2.5:,3.3:')
+    depends_on('py-setuptools',    type='build')
+    depends_on('py-matplotlib',    type=('build', 'run'))
+    depends_on('java',             type=('build', 'run'))
+    depends_on('perl-time-hires',  type=('build', 'run'))
+    depends_on('gnuplot',          type=('build', 'run'))
+    depends_on('mummer',           type=('build', 'run'))
+    depends_on('bedtools2',        type=('build', 'run'))
+    depends_on('bwa',              type=('build', 'run'))
+    depends_on('glimmer',          type=('build', 'run'))