Add package for seqtk

Seqtk is a tool for working with fast[aq] files.

1 files changed, 43 insertions, 0 deletions

diff --git a/var/spack/repos/builtin/packages/seqtk/package.py b/var/spack/repos/builtin/packages/seqtk/package.py
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+++ b/var/spack/repos/builtin/packages/seqtk/package.py
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+##############################################################################
+# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/llnl/spack
+# Please also see the LICENSE file for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class Seqtk(Package):
+    """Toolkit for processing sequences in FASTA/Q formats."""
+
+    homepage = "https://github.com/lh3/seqtk"
+    url      = "https://github.com/lh3/seqtk/archive/v1.1.tar.gz"
+
+    version('1.2', '255ffe05bf2f073dc57abcff97f11a37')
+    version('1.1', 'ebf5cc57698a217150c2250494e039a2')
+
+    depends_on('zlib')
+
+    def install(self, spec, prefix):
+        make()
+        mkdirp(prefix.bin)
+        install('seqtk', prefix.bin)
+        set_executable(join_path(prefix.bin, 'seqtk'))