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| author | manifest <robqiao@users.noreply.github.com> | 2020-07-03 00:13:47 +0930 |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2020-07-02 09:43:47 -0500 |
| commit | f780839b87cf1cb6839b35a5b067331212528fe3 (patch) | |
| tree | ea90f8c70af4ce0df4d4a6b92236f5f26e38a5a1 /var | |
| parent | 204f15b4c143c7a0945119d2325c1c29749ad16f (diff) | |
| download | spack-f780839b87cf1cb6839b35a5b067331212528fe3.tar.gz spack-f780839b87cf1cb6839b35a5b067331212528fe3.tar.bz2 spack-f780839b87cf1cb6839b35a5b067331212528fe3.tar.xz spack-f780839b87cf1cb6839b35a5b067331212528fe3.zip | |
examl + (#17265)
* examl +
* examl style fix
* examl flake8 fix
* Update var/spack/repos/builtin/packages/examl/package.py
using `working_dir`
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Diffstat (limited to 'var')
| -rw-r--r-- | var/spack/repos/builtin/packages/examl/package.py | 50 |
1 files changed, 50 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/examl/package.py b/var/spack/repos/builtin/packages/examl/package.py new file mode 100644 index 0000000000..d5f115b9be --- /dev/null +++ b/var/spack/repos/builtin/packages/examl/package.py @@ -0,0 +1,50 @@ +# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * + + +class Examl(MakefilePackage): + """ + Exascale Maximum Likelihood (ExaML) code for phylogenetic inference + using MPI. This code implements the popular RAxML search algorithm + for maximum likelihood based inference of phylogenetic trees. + """ + + homepage = "https://github.com/stamatak/ExaML" + url = "https://github.com/stamatak/ExaML/archive/v3.0.22.tar.gz" + + maintainers = ['robqiao'] + + version('3.0.22', sha256='802e673b0c2ea83fdbe6b060048d83f22b6978933a04be64fb9b4334fe318ca3') + version('3.0.21', sha256='6c7e6c5d7bf4ab5cfbac5cc0d577885272a803c142e06b531693a6a589102e2e') + version('3.0.20', sha256='023681248bbc7f19821b509948d79301e46bbf275aa90bf12e9f4879639a023b') + version('3.0.19', sha256='3814230bf7578b8396731dc87ce665d0b1a671d8effd571f924c5b7936ae1c9e') + version('3.0.18', sha256='1bacb5124d943d921e7beae52b7062626d0ce3cf2f83e3aa3acf6ea26cf9cd87') + version('3.0.17', sha256='90a859e0b8fff697722352253e748f03c57b78ec5fbc1ae72f7e702d299dac67') + version('3.0.16', sha256='abc922994332d40892e30f077e4644db08cd59662da8e2a9197d1bd8bcb9aa5f') + version('3.0.15', sha256='da5e66a63d6fa34b640535c359d8daf67f23bd2fcc958ac604551082567906b0') + version('3.0.14', sha256='698b538996946ae23a2d6fa1e230c210832e59080da33679ff7d6b342a9e6180') + version('3.0.13', sha256='893aecb5545798235a17975aa07268693d3526d0aee0ed59a2d6e791248791ed') + + variant('mpi', default=True, description='Enable MPI parallel support') + + depends_on('mpi', when='+mpi') + + def build(self, spec, prefix): + ##################### + # Build Directories # + ##################### + with working_dir('examl'): + make('-f', 'Makefile.SSE3.gcc') + with working_dir('parser'): + make('-f', 'Makefile.SSE3.gcc') + + def install(self, spec, prefix): + mkdirp(prefix.bin) + install("examl/examl", prefix.bin) + install("parser/parse-examl", prefix.bin) + install_tree("manual", prefix.manual) + install_tree("testData", prefix.testData) |