diff options
| -rw-r--r-- | var/spack/repos/builtin/packages/mrtrix3/package.py | 62 |
1 files changed, 62 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/mrtrix3/package.py b/var/spack/repos/builtin/packages/mrtrix3/package.py new file mode 100644 index 0000000000..52bd209aea --- /dev/null +++ b/var/spack/repos/builtin/packages/mrtrix3/package.py @@ -0,0 +1,62 @@ +############################################################################## +# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * +import distutils.dir_util + + +class Mrtrix3(Package): + """MRtrix provides a set of tools to perform various advanced diffusion MRI + analyses, including constrained spherical deconvolution (CSD), + probabilistic tractography, track-density imaging, and apparent fibre + density.""" + + homepage = "http://www.mrtrix.org/" + url = "https://github.com/MRtrix3/mrtrix3" + + version('2017-09-25', commit='72aca89e3d38c9d9e0c47104d0fb5bd2cbdb536d', + git='https://github.com/MRtrix3/mrtrix3.git') + + depends_on('python@2.7:', type=('build', 'run')) + depends_on('py-numpy', type=('build', 'run')) + depends_on('mesa-glu') + depends_on('qt+opengl@4.7:') + depends_on('eigen') + depends_on('zlib') + depends_on('libtiff') + depends_on('fftw') + + conflicts('%gcc@7:', when='@2017-09-25') # MRtrix3/mrtrix3#1041 + + def install(self, spec, prefix): + configure = Executable('./configure') + build = Executable('./build') + configure() + build() + # install_tree('.', prefix) does not work since the prefix + # directory already exists by this point + distutils.dir_util.copy_tree('.', prefix) + + def setup_environment(self, spac_env, run_env): + run_env.prepend_path('PATH', self.prefix) |