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| -rw-r--r-- | var/spack/repos/builtin/packages/pbsuite/package.py | 28 |
1 files changed, 28 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/pbsuite/package.py b/var/spack/repos/builtin/packages/pbsuite/package.py new file mode 100644 index 0000000000..ad7a4dd3d2 --- /dev/null +++ b/var/spack/repos/builtin/packages/pbsuite/package.py @@ -0,0 +1,28 @@ +# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * + + +class Pbsuite(Package): + """PBJelly is a highly automated pipeline that aligns long sequencing + reads (such as PacBio RS reads or long 454 reads in fasta format) + to high-confidence draft assembles.""" + + homepage = "https://sourceforge.net/p/pb-jelly/wiki/Home/" + url = "https://downloads.sourceforge.net/project/pb-jelly/PBSuite_15.8.24.tgz" + + version('15.8.24', sha256='1be082faa62cb3f701c78498db8544c844c3d6d3e3524fecf00a12e82a97e12b') + + depends_on('blasr@1.3.1:', type='run') + depends_on('python@2.7:', type='run') + depends_on('py-networkx@1.1:', type='run') + + def install(self, spec, prefix): + install_tree('pbsuite', prefix.pbsuite) + install_tree('bin', prefix.bin) + + def setup_environment(self, spack_env, run_env): + run_env.set('PYTHONPATH', self.prefix) |