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| -rw-r--r-- | var/spack/repos/builtin/packages/py-pycortex/package.py | 53 |
1 files changed, 53 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/py-pycortex/package.py b/var/spack/repos/builtin/packages/py-pycortex/package.py new file mode 100644 index 0000000000..158c600114 --- /dev/null +++ b/var/spack/repos/builtin/packages/py-pycortex/package.py @@ -0,0 +1,53 @@ +# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * + + +class PyPycortex(PythonPackage): + """Python Cortical mapping software for fMRI data.""" + + # When pycortex is started it creates a user config file (on linux located + # in ~/.config/pycortex) which can be problematic when reinstalling a newer + # version with spack due to hardscoded absolute paths of the pycortex module + + homepage = "https://github.com/gallantlab/pycortex" + pypi = "pycortex/pycortex-1.2.2.tar.gz" + + version('1.2.2', sha256='ac46ed6a1dc727c3126c2b5d7916fc0ac21a6510c32a5edcd3b8cfb7b2128414') + + depends_on('py-setuptools', type='build') + depends_on('py-cython', type='build') + depends_on('py-future', type=('build', 'run')) + depends_on('py-numpy', type=('build', 'run')) + depends_on('py-scipy', type=('build', 'run')) + depends_on('py-tornado@4.3:', type=('build', 'run')) + depends_on('py-shapely', type=('build', 'run')) + depends_on('py-lxml', type=('build', 'run')) + depends_on('py-html5lib', type=('build', 'run')) + depends_on('py-h5py', type=('build', 'run')) + depends_on('py-numexpr', type=('build', 'run')) + depends_on('py-cython', type=('build', 'run')) # is in install_requires + depends_on('py-matplotlib', type=('build', 'run')) + depends_on('pil', type=('build', 'run')) + depends_on('py-nibabel', type=('build', 'run')) + depends_on('py-networkx@2.1:', type=('build', 'run')) + depends_on('py-imageio', type=('build', 'run')) + depends_on('py-wget', type=('build', 'run')) + + # inkscape is not in spack + # TODO remove this patch and add inkscape dependency once it is in + def patch(self): + # remove inkscape dependency + filter_file('from .testing_utils import INKSCAPE_VERSION', '', + 'cortex/utils.py', + string=True) + filter_file('open_inkscape=True', 'open_inkscape=False', + 'cortex/utils.py', + string=True) + filter_file('from .testing_utils import INKSCAPE_VERSION', + 'INKSCAPE_VERSION = None', + 'cortex/svgoverlay.py', + string=True) |