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| -rw-r--r-- | var/spack/repos/builtin/packages/r-tfmpvalue/package.py | 43 |
1 files changed, 43 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/r-tfmpvalue/package.py b/var/spack/repos/builtin/packages/r-tfmpvalue/package.py new file mode 100644 index 0000000000..87627579a1 --- /dev/null +++ b/var/spack/repos/builtin/packages/r-tfmpvalue/package.py @@ -0,0 +1,43 @@ +############################################################################## +# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/spack/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class RTfmpvalue(RPackage): + """In putative Transcription Factor Binding Sites (TFBSs) identification + from sequence/alignments, we are interested in the significance of + certain match score. TFMPvalue provides the accurate calculation of + P-value with score threshold for Position Weight Matrices, or the score + with given P-value. This package is an interface to code originally + made available by Helene Touzet and Jean-Stephane Varre, 2007, + Algorithms Mol Biol:2, 15.""" + + homepage = "https://github.com/ge11232002/TFMPvalue" + url = "https://cran.rstudio.com/src/contrib/TFMPvalue_0.0.6.tar.gz" + list_url = "https://cran.rstudio.com/src/contrib/Archive/TFMPvalue" + + version('0.0.6', '69fdf4f9b9a0f408a5cee9ce34bea261') + + depends_on('r-rcpp@0.11.1:', type=('build', 'run')) |