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-rw-r--r--var/spack/repos/builtin/packages/nseg/package.py81
1 files changed, 81 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/nseg/package.py b/var/spack/repos/builtin/packages/nseg/package.py
new file mode 100644
index 0000000000..ed5f903516
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+++ b/var/spack/repos/builtin/packages/nseg/package.py
@@ -0,0 +1,81 @@
+# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+from spack import *
+
+
+class Nseg(MakefilePackage):
+ """NSEG - Low complexity sequence identification"""
+
+ homepage = "ftp://ftp.ncbi.nih.gov/pub/seg/nseg/"
+ url = "ftp://ftp.ncbi.nih.gov/pub/seg/nseg/nseg.c"
+
+ version('1.0', sha256='afae364fbe51caa1eccb704ed0b954437a3ef48a0cd3bf473f4b61d6fde9617e',
+ expand=False)
+
+ resource(
+ name='makefile',
+ url="ftp://ftp.ncbi.nih.gov/pub/seg/nseg/makefile",
+ sha256='32937aef6969550ca3c762b5dd61b1520635cc46e773e35e56c5718f75838cee',
+ expand=False,
+ )
+
+ resource(
+ name='genwin.c',
+ url="ftp://ftp.ncbi.nih.gov/pub/seg/nseg/genwin.c",
+ sha256='d392d2db625dc8c90b00f2a86028a3a45d121e15eb403b51c2f9b01692ab10d9',
+ expand=False,
+ )
+
+ resource(
+ name='genwin.h',
+ url="ftp://ftp.ncbi.nih.gov/pub/seg/nseg/genwin.h",
+ sha256='1c701d87bf6200bfa40faa16fe665828a010727ef1aa0e8a1e5823605165fb86',
+ expand=False,
+ )
+
+ resource(
+ name='lnfac.h',
+ url="ftp://ftp.ncbi.nih.gov/pub/seg/nseg/lnfac.h",
+ sha256='5048e4f3dc3a7ea420d4eb4912a661f285634fbb205411b647b1f00c3fe3a0d2',
+ expand=False,
+ )
+
+ resource(
+ name='nmerge.c',
+ url="ftp://ftp.ncbi.nih.gov/pub/seg/nseg/nmerge.c",
+ sha256='c8a4bb4c960acf7fcd7509b635766b618efdab9f09aec36443040759eca3bce3',
+ expand=False,
+ )
+
+ resource(
+ name='runnseg',
+ url="ftp://ftp.ncbi.nih.gov/pub/seg/nseg/runnseg",
+ sha256='2830a5a1c5ea1a879cf3a415dfbb23db7a81e84d41698ddf765f2e1ef42e7c78',
+ expand=False,
+ )
+
+ build_directory = 'nseg'
+
+ @run_before('build')
+ def prepare_source(self):
+ # create the build dir
+ mkdirp(self.build_directory)
+
+ # move the primary source file in
+ copy('nseg.c', join_path(self.build_directory, 'nseg.c'))
+
+ # move all of the single-file resources into the build dir
+ for key in self.resources:
+ for res in self.resources[key]:
+ res_name = res.name
+ res_path = join_path(res.fetcher.stage.path, res.name)
+ copy(res_path, join_path(self.build_directory, res_name))
+
+ def install(self, spec, prefix):
+ with working_dir(self.build_directory):
+ mkdirp(prefix.bin)
+ install('nseg', prefix.bin)
+ install('nmerge', prefix.bin)