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| -rw-r--r-- | var/spack/repos/builtin/packages/pasta/package.py | 41 |
1 files changed, 41 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/pasta/package.py b/var/spack/repos/builtin/packages/pasta/package.py new file mode 100644 index 0000000000..885e0673c9 --- /dev/null +++ b/var/spack/repos/builtin/packages/pasta/package.py @@ -0,0 +1,41 @@ +# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * + + +class Pasta(Package): + """PASTA (Practical Alignment using SATe and Transitivity)""" + + homepage = "https://github.com/smirarab/pasta" + git = "https://github.com/smirarab/pasta" + + version('1.8.3', commit='738bec5e0d5a18d013c193d7453374bed47456c9') + + depends_on('python@2.7:') + depends_on('py-dendropy') + depends_on('java') + + resource( + name='tools', + git='https://github.com/smirarab/sate-tools-linux', + commit='90fb074d61af554e94d1a67583dd3a80b11417ea', + destination='.' + ) + + def setup_environment(self, spack_env, run_env): + tools = join_path(self.prefix, 'sate-tools-linux') + spack_env.set('PASTA_TOOLS_DEVDIR', tools) + + def install(self, spec, prefix): + # build process for pasta is very hacky -- uses hard links to source + # install the tree first so links don't break + install_tree('.', prefix) + + # run the 'build' from within the prefix + python = which('python2.7') + + with working_dir(prefix): + python('setup.py', 'develop') |