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| -rw-r--r-- | var/spack/repos/builtin/packages/r-affxparser/package.py | 42 |
1 files changed, 42 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/r-affxparser/package.py b/var/spack/repos/builtin/packages/r-affxparser/package.py new file mode 100644 index 0000000000..7b001b4ace --- /dev/null +++ b/var/spack/repos/builtin/packages/r-affxparser/package.py @@ -0,0 +1,42 @@ +############################################################################## +# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class RAffxparser(RPackage): + """Package for parsing Affymetrix files (CDF, CEL, CHP, BPMAP, BAR). + It provides methods for fast and memory efficient parsing of + Affymetrix files using the Affymetrix' Fusion SDK. Both ASCII- + and binary-based files are supported. Currently, there are methods + for reading chip definition file (CDF) and a cell intensity file (CEL). + These files can be read either in full or in part. For example, + probe signals from a few probesets can be extracted very quickly + from a set of CEL files into a convenient list structure.""" + + homepage = "https://www.bioconductor.org/packages/affxparser/" + url = "https://www.bioconductor.org/packages/release/bioc/src/contrib/affxparser_1.48.0.tar.gz" + list_url = homepage + + version('1.48.0', '20ae3f61e3ea25c3baeabf949b1f1165') |