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| -rw-r--r-- | var/spack/repos/builtin/packages/r-goseq/package.py | 43 |
1 files changed, 43 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/r-goseq/package.py b/var/spack/repos/builtin/packages/r-goseq/package.py new file mode 100644 index 0000000000..b296d8a5db --- /dev/null +++ b/var/spack/repos/builtin/packages/r-goseq/package.py @@ -0,0 +1,43 @@ +############################################################################## +# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/spack/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class RGoseq(RPackage): + """Detects Gene Ontology and/or other user defined categories which are + over/under represented in RNA-seq data""" + + homepage = "https://bioconductor.org/packages/release/bioc/html/goseq.html" + git = "https://git.bioconductor.org/packages/goseq.git" + + version('1.32.0', commit='32fcbe647eea17d7d0d7a262610811502c421d36') + + depends_on('r@3.5.0:3.5.9', when='@1.32.0:', type=('build', 'run')) + depends_on('r-biasedurn', type=('build', 'run')) + depends_on('r-genelendatabase@1.9.2:', type=('build', 'run')) + depends_on('r-mgcv', type=('build', 'run')) + depends_on('r-annotationdbi', type=('build', 'run')) + depends_on('r-go-db', type=('build', 'run')) + depends_on('r-biocgenerics', type=('build', 'run')) |