diff options
| -rw-r--r-- | var/spack/repos/builtin/packages/snap-korf/package.py | 23 |
1 files changed, 18 insertions, 5 deletions
diff --git a/var/spack/repos/builtin/packages/snap-korf/package.py b/var/spack/repos/builtin/packages/snap-korf/package.py index 511c9895dc..5a53d63c26 100644 --- a/var/spack/repos/builtin/packages/snap-korf/package.py +++ b/var/spack/repos/builtin/packages/snap-korf/package.py @@ -10,20 +10,33 @@ class SnapKorf(MakefilePackage): homepage = "http://korflab.ucdavis.edu/software.html" url = "http://korflab.ucdavis.edu/Software/snap-2013-11-29.tar.gz" + git = "https://github.com/KorfLab/SNAP.git" + version('2021-11-04', commit='62ff3120fceccb03b5eea9d21afec3167dedfa94') version('2013-11-29', sha256='e2a236392d718376356fa743aa49a987aeacd660c6979cee67121e23aeffc66a') depends_on('perl', type=('build', 'run')) - depends_on('boost') - depends_on('sqlite') - depends_on('sparsehash') - conflicts('%gcc@5:', when='@2013-11-29') + def edit(self, spec, prefix): + if spec.satisfies('@2013-11-29%gcc@6:'): + rstr = '\\1 -Wno-tautological-compare -Wno-misleading-indentation' + filter_file('(-Werror)', rstr, 'Zoe/Makefile') + rstr = '\\1 -Wno-error=format-overflow -Wno-misleading-indentation' + filter_file('(-Werror)', rstr, 'Makefile') + + filter_file(r'(^const char \* zoeFunction;)', 'extern \\1', + 'Zoe/zoeTools.h') + filter_file(r'(^const char \* zoeConstructor;)', 'extern \\1', + 'Zoe/zoeTools.h') + filter_file(r'(^const char \* zoeMethod;)', 'extern \\1', + 'Zoe/zoeTools.h') def install(self, spec, prefix): mkdirp(prefix.bin) - progs = ['snap', 'fathom', 'forge', 'depend', 'exonpairs', 'hmm-info'] + progs = ['snap', 'fathom', 'forge'] + if spec.satisfies('@2013-11-29'): + progs = progs + ['depend', 'exonpairs', 'hmm-info'] for p in progs: install(p, prefix.bin) |