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13 files changed, 606 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/r-brew/package.py b/var/spack/repos/builtin/packages/r-brew/package.py new file mode 100644 index 0000000000..111606d576 --- /dev/null +++ b/var/spack/repos/builtin/packages/r-brew/package.py @@ -0,0 +1,43 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class RBrew(Package): + """brew implements a templating framework for mixing text and R code for + report generation. brew template syntax is similar to PHP, Ruby's erb + module, Java Server Pages, and Python's psp module.""" + + homepage = "https://cran.r-project.org/package=brew" + url = "https://cran.r-project.org/src/contrib/brew_1.0-6.tar.gz" + list_url = "https://cran.r-project.org/src/contrib/Archive/brew" + + version('1.0-6', '4aaca5e6ec145e0fc0fe6375ce1f3806') + + extends('R') + + def install(self, spec, prefix): + R('CMD', 'INSTALL', '--library={0}'.format(self.module.r_lib_dir), + self.stage.source_path) diff --git a/var/spack/repos/builtin/packages/r-chron/package.py b/var/spack/repos/builtin/packages/r-chron/package.py new file mode 100644 index 0000000000..9cd9d76e9e --- /dev/null +++ b/var/spack/repos/builtin/packages/r-chron/package.py @@ -0,0 +1,41 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class RChron(Package): + """Chronological objects which can handle dates and times.""" + + homepage = "https://cran.r-project.org/package=chron" + url = "https://cran.r-project.org/src/contrib/chron_2.3-47.tar.gz" + list_url = "https://cran.r-project.org/src/contrib/Archive/chron" + + version('2.3-47', 'b8890cdc5f2337f8fd775b0becdcdd1f') + + extends('R') + + def install(self, spec, prefix): + R('CMD', 'INSTALL', '--library={0}'.format(self.module.r_lib_dir), + self.stage.source_path) diff --git a/var/spack/repos/builtin/packages/r-class/package.py b/var/spack/repos/builtin/packages/r-class/package.py new file mode 100644 index 0000000000..f541ea3611 --- /dev/null +++ b/var/spack/repos/builtin/packages/r-class/package.py @@ -0,0 +1,44 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class RClass(Package): + """Various functions for classification, including k-nearest neighbour, + Learning Vector Quantization and Self-Organizing Maps.""" + + homepage = "http://www.stats.ox.ac.uk/pub/MASS4/" + url = "https://cran.r-project.org/src/contrib/class_7.3-14.tar.gz" + list_url = "https://cran.r-project.org/src/contrib/Archive/class" + + version('7.3-14', '6a21dd206fe4ea29c55faeb65fb2b71e') + + extends('R') + + depends_on('r-mass', type=nolink) + + def install(self, spec, prefix): + R('CMD', 'INSTALL', '--library={0}'.format(self.module.r_lib_dir), + self.stage.source_path) diff --git a/var/spack/repos/builtin/packages/r-crayon/package.py b/var/spack/repos/builtin/packages/r-crayon/package.py new file mode 100644 index 0000000000..1e0befbca9 --- /dev/null +++ b/var/spack/repos/builtin/packages/r-crayon/package.py @@ -0,0 +1,45 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class RCrayon(Package): + """Colored terminal output on terminals that support 'ANSI' color and + highlight codes. It also works in 'Emacs' 'ESS'. 'ANSI' color support is + automatically detected. Colors and highlighting can be combined and nested. + New styles can also be created easily. This package was inspired by the + 'chalk' 'JavaScript' project.""" + + homepage = "https://github.com/gaborcsardi/crayon" + url = "https://cran.r-project.org/src/contrib/crayon_1.3.2.tar.gz" + list_url = "https://cran.r-project.org/src/contrib/Archive/crayon" + + version('1.3.2', 'fe29c6204d2d6ff4c2f9d107a03d0cb9') + + extends('R') + + def install(self, spec, prefix): + R('CMD', 'INSTALL', '--library={0}'.format(self.module.r_lib_dir), + self.stage.source_path) diff --git a/var/spack/repos/builtin/packages/r-datatable/package.py b/var/spack/repos/builtin/packages/r-datatable/package.py new file mode 100644 index 0000000000..8b50643341 --- /dev/null +++ b/var/spack/repos/builtin/packages/r-datatable/package.py @@ -0,0 +1,46 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class RDatatable(Package): + """Fast aggregation of large data (e.g. 100GB in RAM), fast ordered joins, + fast add/modify/delete of columns by group using no copies at all, list + columns and a fast file reader (fread). Offers a natural and flexible + syntax, for faster development.""" + + homepage = "https://github.com/Rdatatable/data.table/wiki" + url = "https://cran.r-project.org/src/contrib/data.table_1.9.6.tar.gz" + list_url = "https://cran.r-project.org/src/contrib/Archive/data.table" + + version('1.9.6', 'b1c0c7cce490bdf42ab288541cc55372') + + extends('R') + + depends_on('r-chron') + + def install(self, spec, prefix): + R('CMD', 'INSTALL', '--library={0}'.format(self.module.r_lib_dir), + self.stage.source_path) diff --git a/var/spack/repos/builtin/packages/r-e1071/package.py b/var/spack/repos/builtin/packages/r-e1071/package.py new file mode 100644 index 0000000000..c2e7166403 --- /dev/null +++ b/var/spack/repos/builtin/packages/r-e1071/package.py @@ -0,0 +1,45 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class RE1071(Package): + """Functions for latent class analysis, short time Fourier transform, fuzzy + clustering, support vector machines, shortest path computation, bagged + clustering, naive Bayes classifier, ...""" + + homepage = "https://cran.r-project.org/package=e1071" + url = "https://cran.r-project.org/src/contrib/e1071_1.6-7.tar.gz" + list_url = "https://cran.r-project.org/src/contrib/Archive/e1071" + + version('1.6-7', 'd109a7e3dd0c905d420e327a9a921f5a') + + extends('R') + + depends_on('r-class', type=nolink) + + def install(self, spec, prefix): + R('CMD', 'INSTALL', '--library={0}'.format(self.module.r_lib_dir), + self.stage.source_path) diff --git a/var/spack/repos/builtin/packages/r-gdata/package.py b/var/spack/repos/builtin/packages/r-gdata/package.py new file mode 100644 index 0000000000..0a09a1145b --- /dev/null +++ b/var/spack/repos/builtin/packages/r-gdata/package.py @@ -0,0 +1,59 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class RGdata(Package): + """Various R programming tools for data manipulation, including: - medical + unit conversions ('ConvertMedUnits', 'MedUnits'), - combining objects + ('bindData', 'cbindX', 'combine', 'interleave'), - character vector + operations ('centerText', 'startsWith', 'trim'), - factor manipulation + ('levels', 'reorder.factor', 'mapLevels'), - obtaining information about R + objects ('object.size', 'elem', 'env', 'humanReadable', 'is.what', 'll', + 'keep', 'ls.funs', 'Args','nPairs', 'nobs'), - manipulating MS-Excel + formatted files ('read.xls', 'installXLSXsupport', 'sheetCount', + 'xlsFormats'), - generating fixed-width format files ('write.fwf'), - + extricating components of date & time objects ('getYear', 'getMonth', + 'getDay', 'getHour', 'getMin', 'getSec'), - operations on columns of data + frames ('matchcols', 'rename.vars'), - matrix operations ('unmatrix', + 'upperTriangle', 'lowerTriangle'), - operations on vectors ('case', + 'unknownToNA', 'duplicated2', 'trimSum'), - operations on data frames + ('frameApply', 'wideByFactor'), - value of last evaluated expression + ('ans'), and - wrapper for 'sample' that ensures consistent behavior for + both scalar and vector arguments ('resample').""" + + homepage = "https://cran.r-project.org/package=gdata" + url = "https://cran.r-project.org/src/contrib/gdata_2.17.0.tar.gz" + list_url = "https://cran.r-project.org/src/contrib/Archive/gdata" + + version('2.17.0', 'c716b663b9dc16ad8cafe6acc781a75f') + + extends('R') + + depends_on('r-gtools', type=nolink) + + def install(self, spec, prefix): + R('CMD', 'INSTALL', '--library={0}'.format(self.module.r_lib_dir), + self.stage.source_path) diff --git a/var/spack/repos/builtin/packages/r-gtools/package.py b/var/spack/repos/builtin/packages/r-gtools/package.py new file mode 100644 index 0000000000..367bb30f87 --- /dev/null +++ b/var/spack/repos/builtin/packages/r-gtools/package.py @@ -0,0 +1,60 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class RGtools(Package): + """Functions to assist in R programming, including: - assist in developing, + updating, and maintaining R and R packages ('ask', 'checkRVersion', + 'getDependencies', 'keywords', 'scat'), - calculate the logit and inverse + logit transformations ('logit', 'inv.logit'), - test if a value is missing, + empty or contains only NA and NULL values ('invalid'), - manipulate R's + .Last function ('addLast'), - define macros ('defmacro'), - detect odd and + even integers ('odd', 'even'), - convert strings containing non-ASCII + characters (like single quotes) to plain ASCII ('ASCIIfy'), - perform a + binary search ('binsearch'), - sort strings containing both numeric and + character components ('mixedsort'), - create a factor variable from the + quantiles of a continuous variable ('quantcut'), - enumerate permutations + and combinations ('combinations', 'permutation'), - calculate and convert + between fold-change and log-ratio ('foldchange', 'logratio2foldchange', + 'foldchange2logratio'), - calculate probabilities and generate random + numbers from Dirichlet distributions ('rdirichlet', 'ddirichlet'), - apply + a function over adjacent subsets of a vector ('running'), - modify the + TCP\_NODELAY ('de-Nagle') flag for socket objects, - efficient 'rbind' of + data frames, even if the column names don't match ('smartbind'), - generate + significance stars from p-values ('stars.pval'), - convert characters + to/from ASCII codes.""" + + homepage = "https://cran.r-project.org/package=gtools" + url = "https://cran.r-project.org/src/contrib/gtools_3.5.0.tar.gz" + list_url = "https://cran.r-project.org/src/contrib/Archive/gtools" + + version('3.5.0', '45f8800c0336d35046641fbacc56bdbb') + + extends('R') + + def install(self, spec, prefix): + R('CMD', 'INSTALL', '--library={0}'.format(self.module.r_lib_dir), + self.stage.source_path) diff --git a/var/spack/repos/builtin/packages/r-plotrix/package.py b/var/spack/repos/builtin/packages/r-plotrix/package.py new file mode 100644 index 0000000000..d1d61dbc4d --- /dev/null +++ b/var/spack/repos/builtin/packages/r-plotrix/package.py @@ -0,0 +1,41 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class RPlotrix(Package): + """Lots of plots, various labeling, axis and color scaling functions.""" + + homepage = "https://cran.r-project.org/package=plotrix" + url = "https://cran.r-project.org/src/contrib/plotrix_3.6-3.tar.gz" + list_url = "https://cran.r-project.org/src/contrib/Archive/plotrix" + + version('3.6-3', '23e3e022a13a596e9b77b40afcb4a2ef') + + extends('R') + + def install(self, spec, prefix): + R('CMD', 'INSTALL', '--library={0}'.format(self.module.r_lib_dir), + self.stage.source_path) diff --git a/var/spack/repos/builtin/packages/r-praise/package.py b/var/spack/repos/builtin/packages/r-praise/package.py new file mode 100644 index 0000000000..102d86d2fa --- /dev/null +++ b/var/spack/repos/builtin/packages/r-praise/package.py @@ -0,0 +1,41 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class RPraise(Package): + """Build friendly R packages that praise their users if they have done + something good, or they just need it to feel better.""" + + homepage = "https://github.com/gaborcsardi/praise" + url = "https://cran.r-project.org/src/contrib/praise_1.0.0.tar.gz" + + version('1.0.0', '9318724cec0454884b5f762bee2da6a1') + + extends('R') + + def install(self, spec, prefix): + R('CMD', 'INSTALL', '--library={0}'.format(self.module.r_lib_dir), + self.stage.source_path) diff --git a/var/spack/repos/builtin/packages/r-roxygen2/package.py b/var/spack/repos/builtin/packages/r-roxygen2/package.py new file mode 100644 index 0000000000..4f4b8dcafa --- /dev/null +++ b/var/spack/repos/builtin/packages/r-roxygen2/package.py @@ -0,0 +1,48 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class RRoxygen2(Package): + """A 'Doxygen'-like in-source documentation system for Rd, collation, and + 'NAMESPACE' files.""" + + homepage = "https://github.com/klutometis/roxygen" + url = "https://cran.r-project.org/src/contrib/roxygen2_5.0.1.tar.gz" + list_url = "https://cran.r-project.org/src/contrib/Archive/roxygen2" + + version('5.0.1', 'df5bdbc12fda372e427710ef1cd92ed7') + + extends('R') + + depends_on('r-stringr', type=nolink) + depends_on('r-stringi', type=nolink) + depends_on('r-brew', type=nolink) + depends_on('r-digest', type=nolink) + depends_on('r-rcpp', type=nolink) + + def install(self, spec, prefix): + R('CMD', 'INSTALL', '--library={0}'.format(self.module.r_lib_dir), + self.stage.source_path) diff --git a/var/spack/repos/builtin/packages/r-testthat/package.py b/var/spack/repos/builtin/packages/r-testthat/package.py new file mode 100644 index 0000000000..60dfd2afcd --- /dev/null +++ b/var/spack/repos/builtin/packages/r-testthat/package.py @@ -0,0 +1,48 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class RTestthat(Package): + """A unit testing system designed to be fun, flexible and easy to set + up.""" + + homepage = "https://github.com/hadley/testthat" + url = "https://cran.r-project.org/src/contrib/testthat_1.0.2.tar.gz" + list_url = "https://cran.r-project.org/src/contrib/Archive/testthat" + + version('1.0.2', '6c6a90c8db860292df5784a70e07b8dc') + + extends('R') + + depends_on('r-digest', type=nolink) + depends_on('r-crayon', type=nolink) + depends_on('r-praise', type=nolink) + depends_on('r-magrittr', type=nolink) + depends_on('r-R6', type=nolink) + + def install(self, spec, prefix): + R('CMD', 'INSTALL', '--library={0}'.format(self.module.r_lib_dir), + self.stage.source_path) diff --git a/var/spack/repos/builtin/packages/r-xml/package.py b/var/spack/repos/builtin/packages/r-xml/package.py new file mode 100644 index 0000000000..591c887f32 --- /dev/null +++ b/var/spack/repos/builtin/packages/r-xml/package.py @@ -0,0 +1,45 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class RXml(Package): + """Many approaches for both reading and creating XML (and HTML) documents + (including DTDs), both local and accessible via HTTP or FTP. Also offers + access to an 'XPath' "interpreter".""" + + homepage = "http://www.omegahat.net/RSXML" + url = "https://cran.r-project.org/src/contrib/XML_3.98-1.4.tar.gz" + list_url = "https://cran.r-project.org/src/contrib/Archive/XML" + + version('3.98-1', '1a7f3ce6f264eeb109bfa57bedb26c14') + + extends('R') + + depends_on('libxml2') + + def install(self, spec, prefix): + R('CMD', 'INSTALL', '--library={0}'.format(self.module.r_lib_dir), + self.stage.source_path) |