diff options
| -rw-r--r-- | var/spack/repos/builtin/packages/emblmygff3/package.py | 28 | ||||
| -rw-r--r-- | var/spack/repos/builtin/packages/py-bcbio-gff/package.py | 1 |
2 files changed, 29 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/emblmygff3/package.py b/var/spack/repos/builtin/packages/emblmygff3/package.py new file mode 100644 index 0000000000..7803efca76 --- /dev/null +++ b/var/spack/repos/builtin/packages/emblmygff3/package.py @@ -0,0 +1,28 @@ +# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack.package import * + + +class Emblmygff3(PythonPackage): + """ + EMBLmyGFF3 converts an assembly in FASTA format along with associated + annotation in GFF3 format into the EMBL flat file format which is the + required format for submitting annotated assemblies to ENA. + """ + + homepage = "https://github.com/NBISweden/EMBLmyGFF3" + url = "https://github.com/NBISweden/EMBLmyGFF3/archive/refs/tags/v2.2.tar.gz" + + maintainers("snehring") + + version("2.2", sha256="225b2b50da9064f779e164b2859506d7540d11fa78f7d41b5c0d94f02f7845c5") + version("2.1", sha256="64aef403bc64088eca504b69acffb3fb16ec4448cd3d6c9692b7baf276b92fd2") + + depends_on("py-setuptools", type="build") + depends_on("python@3.8.0:", type=("build", "run")) + depends_on("py-biopython@1.78:", type=("build", "run")) + depends_on("py-bcbio-gff@0.6.4:", type=("build", "run")) + depends_on("py-numpy@1.22:", type=("build", "run")) diff --git a/var/spack/repos/builtin/packages/py-bcbio-gff/package.py b/var/spack/repos/builtin/packages/py-bcbio-gff/package.py index 717cf1d165..60b9ea00d6 100644 --- a/var/spack/repos/builtin/packages/py-bcbio-gff/package.py +++ b/var/spack/repos/builtin/packages/py-bcbio-gff/package.py @@ -12,6 +12,7 @@ class PyBcbioGff(PythonPackage): pypi = "bcbio-gff/bcbio-gff-0.6.2.tar.gz" + version("0.7.0", sha256="f7b3922ee274106f8716703f41f05a1795aa9d73e903f4e481995ed8f5f65d2d") version("0.6.2", sha256="c682dc46a90e9fdb124ab5723797a5f71b2e3534542ceff9f6572b64b9814e68") depends_on("py-setuptools", type="build") |