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-rw-r--r--etc/spack/defaults/packages.yaml2
-rw-r--r--var/spack/repos/builtin/packages/hdf5/1.10.7_cmake.patch90
-rw-r--r--var/spack/repos/builtin/packages/hdf5/1.12.0_cmake.patch104
-rw-r--r--var/spack/repos/builtin/packages/hdf5/1.8.21_cmake.patch362
-rw-r--r--var/spack/repos/builtin/packages/hdf5/1.8.22_cmake.patch121
-rw-r--r--var/spack/repos/builtin/packages/hdf5/package.py195
6 files changed, 770 insertions, 104 deletions
diff --git a/etc/spack/defaults/packages.yaml b/etc/spack/defaults/packages.yaml
index 2d6b3da9be..0a5e00ce08 100644
--- a/etc/spack/defaults/packages.yaml
+++ b/etc/spack/defaults/packages.yaml
@@ -48,7 +48,7 @@ packages:
rpc: [libtirpc]
scalapack: [netlib-scalapack, amdscalapack]
sycl: [hipsycl]
- szip: [libszip, libaec]
+ szip: [libaec, libszip]
tbb: [intel-tbb]
unwind: [libunwind]
uuid: [util-linux-uuid, libuuid]
diff --git a/var/spack/repos/builtin/packages/hdf5/1.10.7_cmake.patch b/var/spack/repos/builtin/packages/hdf5/1.10.7_cmake.patch
new file mode 100644
index 0000000000..a85aad1bb3
--- /dev/null
+++ b/var/spack/repos/builtin/packages/hdf5/1.10.7_cmake.patch
@@ -0,0 +1,90 @@
+diff --git a/c++/src/CMakeLists.txt b/c++/src/CMakeLists.txt
+index 8608c67..4b1a2d6 100644
+--- a/c++/src/CMakeLists.txt
++++ b/c++/src/CMakeLists.txt
+@@ -209,7 +209,11 @@ install (
+ )
+
+ if (NOT WIN32 AND NOT MINGW)
+- set (_PKG_CONFIG_COMPILER ${CMAKE_CXX_COMPILER})
++ if (HDF5_ENABLE_PARALLEL AND MPI_CXX_FOUND)
++ set (_PKG_CONFIG_COMPILER ${MPI_CXX_COMPILER})
++ else ()
++ set (_PKG_CONFIG_COMPILER ${CMAKE_CXX_COMPILER})
++ endif ()
+ configure_file (
+ ${HDF_RESOURCES_DIR}/libh5cc.in
+ ${HDF5_BINARY_DIR}/CMakeFiles/h5c++
+ ${HDF5_BINARY_DIR}/CMakeFiles/h5fc
+diff --git a/hl/c++/src/CMakeLists.txt b/hl/c++/src/CMakeLists.txt
+index 1eac9fe..e488656 100644
+--- a/hl/c++/src/CMakeLists.txt
++++ b/hl/c++/src/CMakeLists.txt
+@@ -120,7 +120,11 @@ install (
+ )
+
+ if (NOT WIN32 AND NOT MINGW)
+- set (_PKG_CONFIG_COMPILER ${CMAKE_CXX_COMPILER})
++ if (HDF5_ENABLE_PARALLEL AND MPI_CXX_FOUND)
++ set (_PKG_CONFIG_COMPILER ${MPI_CXX_COMPILER})
++ else ()
++ set (_PKG_CONFIG_COMPILER ${CMAKE_CXX_COMPILER})
++ endif ()
+ configure_file (
+ ${HDF_RESOURCES_DIR}/libh5cc.in
+ ${HDF5_BINARY_DIR}/CMakeFiles/h5hlc++
+diff --git a/hl/src/CMakeLists.txt b/hl/src/CMakeLists.txt
+index 785bdcf..427424e 100644
+--- a/hl/src/CMakeLists.txt
++++ b/hl/src/CMakeLists.txt
+@@ -152,7 +152,11 @@ install (
+ )
+
+ if (NOT WIN32 AND NOT MINGW)
+- set (_PKG_CONFIG_COMPILER ${CMAKE_C_COMPILER})
++ if (HDF5_ENABLE_PARALLEL AND MPI_C_FOUND)
++ set (_PKG_CONFIG_COMPILER ${MPI_C_COMPILER})
++ else ()
++ set (_PKG_CONFIG_COMPILER ${CMAKE_C_COMPILER})
++ endif ()
+ configure_file (
+ ${HDF_RESOURCES_DIR}/libh5cc.in
+ ${HDF5_BINARY_DIR}/CMakeFiles/h5hlcc
+diff --git a/src/CMakeLists.txt b/src/CMakeLists.txt
+index 329a2dc..97019fa 100644
+--- a/src/CMakeLists.txt
++++ b/src/CMakeLists.txt
+@@ -1282,7 +1282,11 @@ install (
+ )
+
+ if (NOT WIN32)
+- set (_PKG_CONFIG_COMPILER ${CMAKE_C_COMPILER})
++ if (HDF5_ENABLE_PARALLEL AND MPI_C_FOUND)
++ set (_PKG_CONFIG_COMPILER ${MPI_C_COMPILER})
++ else ()
++ set (_PKG_CONFIG_COMPILER ${CMAKE_C_COMPILER})
++ endif ()
+ configure_file (
+ ${HDF_RESOURCES_DIR}/libh5cc.in
+ ${HDF5_BINARY_DIR}/CMakeFiles/h5cc
+@@ -1294,6 +1298,20 @@ if (NOT WIN32)
+ PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE
+ COMPONENT libraries
+ )
++ if (HDF5_ENABLE_PARALLEL AND MPI_C_FOUND)
++ #legacy requires a different name
++ configure_file (
++ ${HDF_RESOURCES_DIR}/libh5cc.in
++ ${HDF5_BINARY_DIR}/CMakeFiles/h5pcc
++ @ONLY
++ )
++ install (
++ FILES ${HDF5_BINARY_DIR}/CMakeFiles/h5pcc
++ DESTINATION ${HDF5_INSTALL_BIN_DIR}
++ PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE
++ COMPONENT libraries
++ )
++ endif ()
+ endif ()
+
+ #-----------------------------------------------------------------------------
diff --git a/var/spack/repos/builtin/packages/hdf5/1.12.0_cmake.patch b/var/spack/repos/builtin/packages/hdf5/1.12.0_cmake.patch
new file mode 100644
index 0000000000..68e56e96e7
--- /dev/null
+++ b/var/spack/repos/builtin/packages/hdf5/1.12.0_cmake.patch
@@ -0,0 +1,104 @@
+diff --git a/c++/src/CMakeLists.txt b/c++/src/CMakeLists.txt
+index 39f0f3a..9dc69d6 100644
+--- a/c++/src/CMakeLists.txt
++++ b/c++/src/CMakeLists.txt
+@@ -196,7 +196,11 @@ install (
+ )
+
+ if (NOT WIN32 AND NOT MINGW)
+- set (_PKG_CONFIG_COMPILER ${CMAKE_CXX_COMPILER})
++ if (HDF5_ENABLE_PARALLEL AND MPI_CXX_FOUND)
++ set (_PKG_CONFIG_COMPILER ${MPI_CXX_COMPILER})
++ else ()
++ set (_PKG_CONFIG_COMPILER ${CMAKE_CXX_COMPILER})
++ endif ()
+ configure_file (
+ ${HDF_RESOURCES_DIR}/libh5cc.in
+ ${HDF5_BINARY_DIR}/CMakeFiles/h5c++
+diff --git a/fortran/src/CMakeLists.txt b/fortran/src/CMakeLists.txt
+index b5d1a60..22ed7fb 100644
+--- a/fortran/src/CMakeLists.txt
++++ b/fortran/src/CMakeLists.txt
+@@ -533,7 +533,11 @@ install (
+ )
+
+ if (NOT WIN32 AND NOT MINGW)
+- set (_PKG_CONFIG_COMPILER ${CMAKE_Fortran_COMPILER})
++ if (HDF5_ENABLE_PARALLEL AND MPI_Fortran_FOUND)
++ set (_PKG_CONFIG_COMPILER ${MPI_Fortran_COMPILER})
++ else ()
++ set (_PKG_CONFIG_COMPILER ${CMAKE_Fortran_COMPILER})
++ endif ()
+ configure_file (
+ ${HDF_RESOURCES_DIR}/libh5cc.in
+ ${HDF5_BINARY_DIR}/CMakeFiles/h5fc
+diff --git a/hl/c++/src/CMakeLists.txt b/hl/c++/src/CMakeLists.txt
+index 866f372..6abd376 100644
+--- a/hl/c++/src/CMakeLists.txt
++++ b/hl/c++/src/CMakeLists.txt
+@@ -109,7 +109,11 @@ install (
+ )
+
+ if (NOT WIN32 AND NOT MINGW)
+- set (_PKG_CONFIG_COMPILER ${CMAKE_CXX_COMPILER})
++ if (HDF5_ENABLE_PARALLEL AND MPI_CXX_FOUND)
++ set (_PKG_CONFIG_COMPILER ${MPI_CXX_COMPILER})
++ else ()
++ set (_PKG_CONFIG_COMPILER ${CMAKE_CXX_COMPILER})
++ endif ()
+ configure_file (
+ ${HDF_RESOURCES_DIR}/libh5cc.in
+ ${HDF5_BINARY_DIR}/CMakeFiles/h5hlc++
+diff --git a/hl/src/CMakeLists.txt b/hl/src/CMakeLists.txt
+index 55d84c7..857a390 100644
+--- a/hl/src/CMakeLists.txt
++++ b/hl/src/CMakeLists.txt
+@@ -133,7 +133,11 @@ install (
+ )
+
+ if (NOT WIN32 AND NOT MINGW)
+- set (_PKG_CONFIG_COMPILER ${CMAKE_C_COMPILER})
++ if (HDF5_ENABLE_PARALLEL AND MPI_C_FOUND)
++ set (_PKG_CONFIG_COMPILER ${MPI_C_COMPILER})
++ else ()
++ set (_PKG_CONFIG_COMPILER ${CMAKE_C_COMPILER})
++ endif ()
+ configure_file (
+ ${HDF_RESOURCES_DIR}/libh5cc.in
+ ${HDF5_BINARY_DIR}/CMakeFiles/h5hlcc
+diff --git a/src/CMakeLists.txt b/src/CMakeLists.txt
+index f582056..d7ddee4 100644
+--- a/src/CMakeLists.txt
++++ b/src/CMakeLists.txt
+@@ -1272,7 +1272,11 @@ install (
+ )
+
+ if (NOT WIN32)
+- set (_PKG_CONFIG_COMPILER ${CMAKE_C_COMPILER})
++ if (HDF5_ENABLE_PARALLEL AND MPI_C_FOUND)
++ set (_PKG_CONFIG_COMPILER ${MPI_C_COMPILER})
++ else ()
++ set (_PKG_CONFIG_COMPILER ${CMAKE_C_COMPILER})
++ endif ()
+ configure_file (
+ ${HDF_RESOURCES_DIR}/libh5cc.in
+ ${HDF5_BINARY_DIR}/CMakeFiles/h5cc
+@@ -1284,4 +1288,18 @@ if (NOT WIN32)
+ PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE
+ COMPONENT libraries
+ )
++ if (HDF5_ENABLE_PARALLEL AND MPI_C_FOUND)
++ #legacy requires a different name
++ configure_file (
++ ${HDF_RESOURCES_DIR}/libh5cc.in
++ ${HDF5_BINARY_DIR}/CMakeFiles/h5pcc
++ @ONLY
++ )
++ install (
++ FILES ${HDF5_BINARY_DIR}/CMakeFiles/h5pcc
++ DESTINATION ${HDF5_INSTALL_BIN_DIR}
++ PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE
++ COMPONENT libraries
++ )
++ endif ()
+ endif ()
diff --git a/var/spack/repos/builtin/packages/hdf5/1.8.21_cmake.patch b/var/spack/repos/builtin/packages/hdf5/1.8.21_cmake.patch
new file mode 100644
index 0000000000..227c4db565
--- /dev/null
+++ b/var/spack/repos/builtin/packages/hdf5/1.8.21_cmake.patch
@@ -0,0 +1,362 @@
+diff --git a/c++/src/CMakeLists.txt b/c++/src/CMakeLists.txt
+index 9b9b745..3f05fa0 100644
+--- a/c++/src/CMakeLists.txt
++++ b/c++/src/CMakeLists.txt
+@@ -178,7 +178,11 @@ install (
+ )
+
+ if (NOT WIN32)
+- set (_PKG_CONFIG_COMPILER ${CMAKE_CXX_COMPILER})
++ if (HDF5_ENABLE_PARALLEL AND MPI_CXX_FOUND)
++ set (_PKG_CONFIG_COMPILER ${MPI_CXX_COMPILER})
++ else ()
++ set (_PKG_CONFIG_COMPILER ${CMAKE_CXX_COMPILER})
++ endif ()
+ configure_file (
+ ${HDF_RESOURCES_DIR}/libh5cc.in
+ ${HDF5_BINARY_DIR}/CMakeFiles/h5c++
+diff --git a/config/cmake_ext_mod/FindSZIP.cmake b/config/cmake_ext_mod/FindSZIP.cmake
+index 699be85..846a3d1 100644
+--- a/config/cmake_ext_mod/FindSZIP.cmake
++++ b/config/cmake_ext_mod/FindSZIP.cmake
+@@ -5,140 +5,112 @@
+ # This file is part of HDF5. The full HDF5 copyright notice, including
+ # terms governing use, modification, and redistribution, is contained in
+ # the COPYING file, which can be found at the root of the source code
+-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
++# distribution tree, or in https://www.hdfgroup.org/licenses.
+ # If you do not have access to either file, you may request a copy from
+ # help@hdfgroup.org.
+ #
++#########################################################################
++
++# - Derived from the FindTiff.cmake and FindJPEG.cmake that is included with cmake
++# FindSZIP
+
+-# - Find SZIP library
+-# - Derived from the FindTiff.cmake that is included with cmake
+ # Find the native SZIP includes and library
+-# This module defines
+-# SZIP_INCLUDE_DIRS, where to find tiff.h, etc.
+-# SZIP_LIBRARIES, libraries to link against to use SZIP.
+-# SZIP_FOUND, If false, do not try to use SZIP.
+-# also defined, but not for general use are
+-# SZIP_LIBRARY, where to find the SZIP library.
+-# SZIP_LIBRARY_DEBUG - Debug version of SZIP library
+-# SZIP_LIBRARY_RELEASE - Release Version of SZIP library
+
+-# message (STATUS "Finding SZIP library and headers..." )
++# Imported targets
++##################
+
+-############################################
++# This module defines the following :prop_tgt:`IMPORTED` targets:
+ #
+-# Check the existence of the libraries.
++# SZIP::SZIP
++# The SZIP library, if found.
+ #
+-############################################
+-# This macro was taken directly from the FindQt4.cmake file that is included
+-# with the CMake distribution. This is NOT my work. All work was done by the
+-# original authors of the FindQt4.cmake file. Only minor modifications were
+-# made to remove references to Qt and make this file more generally applicable
+-#########################################################################
++# Result variables
++###################
+
+-macro (SZIP_ADJUST_LIB_VARS basename)
+- if (${basename}_INCLUDE_DIR)
++# This module will set the following variables in your project:
+
+- # if only the release version was found, set the debug variable also to the release version
+- if (${basename}_LIBRARY_RELEASE AND NOT ${basename}_LIBRARY_DEBUG)
+- set (${basename}_LIBRARY_DEBUG ${${basename}_LIBRARY_RELEASE})
+- set (${basename}_LIBRARY ${${basename}_LIBRARY_RELEASE})
+- set (${basename}_LIBRARIES ${${basename}_LIBRARY_RELEASE})
+- endif ()
++# SZIP_FOUND, true if the SZIP headers and libraries were found.
++# SZIP_INCLUDE_DIR, the directory containing the SZIP headers.
++# SZIP_INCLUDE_DIRS, the directory containing the SZIP headers.
++# SZIP_LIBRARIES, libraries to link against to use SZIP.
+
+- # if only the debug version was found, set the release variable also to the debug version
+- if (${basename}_LIBRARY_DEBUG AND NOT ${basename}_LIBRARY_RELEASE)
+- set (${basename}_LIBRARY_RELEASE ${${basename}_LIBRARY_DEBUG})
+- set (${basename}_LIBRARY ${${basename}_LIBRARY_DEBUG})
+- set (${basename}_LIBRARIES ${${basename}_LIBRARY_DEBUG})
+- endif ()
+- if (${basename}_LIBRARY_DEBUG AND ${basename}_LIBRARY_RELEASE)
+- # if the generator supports configuration types then set
+- # optimized and debug libraries, or if the CMAKE_BUILD_TYPE has a value
+- if (CMAKE_CONFIGURATION_TYPES OR CMAKE_BUILD_TYPE)
+- set (${basename}_LIBRARY optimized ${${basename}_LIBRARY_RELEASE} debug ${${basename}_LIBRARY_DEBUG})
+- else ()
+- # if there are no configuration types and CMAKE_BUILD_TYPE has no value
+- # then just use the release libraries
+- set (${basename}_LIBRARY ${${basename}_LIBRARY_RELEASE} )
+- endif ()
+- set (${basename}_LIBRARIES optimized ${${basename}_LIBRARY_RELEASE} debug ${${basename}_LIBRARY_DEBUG})
+- endif ()
++# Cache variables
++#################
+
+- set (${basename}_LIBRARY ${${basename}_LIBRARY} CACHE FILEPATH "The ${basename} library")
++# The following variables may also be set:
+
+- if (${basename}_LIBRARY)
+- set (${basename}_FOUND 1)
+- endif ()
+- endif ()
++# SZIP_LIBRARY, where to find the SZIP library.
++# SZIP_LIBRARY_DEBUG - Debug version of SZIP library
++# SZIP_LIBRARY_RELEASE - Release Version of SZIP library
+
+- # Make variables changeble to the advanced user
+- MARK_AS_ADVANCED (${basename}_LIBRARY ${basename}_LIBRARY_RELEASE ${basename}_LIBRARY_DEBUG ${basename}_INCLUDE_DIR )
+-endmacro ()
+-
+-
+-# Look for the header file.
+-set (SZIP_INCLUDE_SEARCH_DIRS
+- $ENV{SZIP_INSTALL}/include
+- $ENV{SZIP_INSTALL}/include/szip
+- /usr/include
+- /usr/include/szip
+-)
+-
+-set (SZIP_LIB_SEARCH_DIRS
+- $ENV{SZIP_INSTALL}/lib
+- /usr/lib
+-)
+-
+-set (SZIP_BIN_SEARCH_DIRS
+- $ENV{SZIP_INSTALL}/bin
+- /usr/bin
+-)
+-
+-FIND_PATH (SZIP_INCLUDE_DIR
+- NAMES szlib.h
+- PATHS ${SZIP_INCLUDE_SEARCH_DIRS}
+- NO_DEFAULT_PATH
+-)
+-
+-if (WIN32)
+- set (SZIP_SEARCH_DEBUG_NAMES "sz_d;libsz_d")
+- set (SZIP_SEARCH_RELEASE_NAMES "sz;libsz;libszip")
+-else ()
+- set (SZIP_SEARCH_DEBUG_NAMES "sz_d")
+- set (SZIP_SEARCH_RELEASE_NAMES "sz;szip")
+-endif ()
++# message (STATUS "Finding SZIP library and headers..." )
++#########################################################################
+
+-# Look for the library.
+-FIND_LIBRARY (SZIP_LIBRARY_DEBUG
+- NAMES ${SZIP_SEARCH_DEBUG_NAMES}
+- PATHS ${SZIP_LIB_SEARCH_DIRS}
+- NO_DEFAULT_PATH
+-)
+-
+-FIND_LIBRARY (SZIP_LIBRARY_RELEASE
+- NAMES ${SZIP_SEARCH_RELEASE_NAMES}
+- PATHS ${SZIP_LIB_SEARCH_DIRS}
+- NO_DEFAULT_PATH
+-)
+-
+-SZIP_ADJUST_LIB_VARS (SZIP)
+-
+-if (SZIP_INCLUDE_DIR AND SZIP_LIBRARY)
+- set (SZIP_FOUND 1)
+- set (SZIP_LIBRARIES ${SZIP_LIBRARY})
+- set (SZIP_INCLUDE_DIRS ${SZIP_INCLUDE_DIR})
+- if (SZIP_LIBRARY_DEBUG)
+- get_filename_component (SZIP_LIBRARY_PATH ${SZIP_LIBRARY_DEBUG} PATH)
+- set (SZIP_LIB_DIR ${SZIP_LIBRARY_PATH})
+- elseif ()
+- get_filename_component (SZIP_LIBRARY_PATH ${SZIP_LIBRARY_RELEASE} PATH)
+- set (SZIP_LIB_DIR ${SZIP_LIBRARY_PATH})
+- endif ()
+-else ()
+- set (SZIP_FOUND 0)
+- set (SZIP_LIBRARIES)
+- set (SZIP_INCLUDE_DIRS)
+-endif ()
++
++find_path(SZIP_INCLUDE_DIR szlib.h)
++
++set(szip_names ${SZIP_NAMES} sz szip szip-static libsz libszip libszip-static)
++foreach(name ${szip_names})
++ list (APPEND szip_names_debug "${name}d")
++endforeach()
++
++if(NOT SZIP_LIBRARY)
++ find_library(SZIP_LIBRARY_RELEASE NAMES ${szip_names})
++ find_library(SZIP_LIBRARY_DEBUG NAMES ${szip_names_debug})
++ include(SelectLibraryConfigurations)
++ select_library_configurations(SZIP)
++ mark_as_advanced(SZIP_LIBRARY_RELEASE SZIP_LIBRARY_DEBUG)
++endif()
++unset(szip_names)
++unset(szip_names_debug)
++
++if(SZIP_INCLUDE_DIR AND EXISTS "${SZIP_INCLUDE_DIR}/SZconfig.h")
++ file(STRINGS "${SZIP_INCLUDE_DIR}/SZconfig.h" szip_version_str
++ REGEX "^#define[\t ]+SZIP_PACKAGE_VERSION[\t ]+.*")
++
++ string(REGEX REPLACE "^#define[\t ]+SZIP_PACKAGE_VERSION[\t ]+([0-9]+).*"
++ "\\1" SZIP_VERSION "${szip_version_str}")
++ unset(szip_version_str)
++endif()
++
++include(FindPackageHandleStandardArgs)
++find_package_handle_standard_args(SZIP
++ REQUIRED_VARS SZIP_LIBRARY SZIP_INCLUDE_DIR
++ VERSION_VAR SZIP_VERSION)
++
++if(SZIP_FOUND)
++ set(SZIP_LIBRARIES ${SZIP_LIBRARY})
++ set(SZIP_INCLUDE_DIRS "${SZIP_INCLUDE_DIR}")
++
++ if(NOT TARGET SZIP::SZIP)
++ add_library(SZIP::SZIP UNKNOWN IMPORTED)
++ if(SZIP_INCLUDE_DIRS)
++ set_target_properties(SZIP::SZIP PROPERTIES
++ INTERFACE_INCLUDE_DIRECTORIES "${SZIP_INCLUDE_DIRS}")
++ endif()
++ if(EXISTS "${SZIP_LIBRARY}")
++ set_target_properties(SZIP::SZIP PROPERTIES
++ IMPORTED_LINK_INTERFACE_LANGUAGES "C"
++ IMPORTED_LOCATION "${SZIP_LIBRARY}")
++ endif()
++ if(EXISTS "${SZIP_LIBRARY_RELEASE}")
++ set_property(TARGET SZIP::SZIP APPEND PROPERTY
++ IMPORTED_CONFIGURATIONS RELEASE)
++ set_target_properties(SZIP::SZIP PROPERTIES
++ IMPORTED_LINK_INTERFACE_LANGUAGES_RELEASE "C"
++ IMPORTED_LOCATION_RELEASE "${SZIP_LIBRARY_RELEASE}")
++ endif()
++ if(EXISTS "${SZIP_LIBRARY_DEBUG}")
++ set_property(TARGET SZIP::SZIP APPEND PROPERTY
++ IMPORTED_CONFIGURATIONS DEBUG)
++ set_target_properties(SZIP::SZIP PROPERTIES
++ IMPORTED_LINK_INTERFACE_LANGUAGES_DEBUG "C"
++ IMPORTED_LOCATION_DEBUG "${SZIP_LIBRARY_DEBUG}")
++ endif()
++ endif()
++endif()
++
++mark_as_advanced(SZIP_LIBRARY SZIP_INCLUDE_DIR)
+
+ # Report the results.
+ if (NOT SZIP_FOUND)
+@@ -146,36 +118,12 @@ if (NOT SZIP_FOUND)
+ "SZip was not found. Make sure SZIP_LIBRARY and SZIP_INCLUDE_DIR are set or set the SZIP_INSTALL environment variable."
+ )
+ if (NOT SZIP_FIND_QUIETLY)
+- message (STATUS "${SZIP_DIR_MESSAGE}")
++ if (CMAKE_VERSION VERSION_GREATER_EQUAL "3.15.0")
++ message (VERBOSE "${SZIP_DIR_MESSAGE}")
++ endif ()
+ else ()
+ if (SZIP_FIND_REQUIRED)
+ message (FATAL_ERROR "SZip was NOT found and is Required by this project")
+ endif ()
+ endif ()
+ endif ()
+-
+-if (SZIP_FOUND)
+- include (CheckSymbolExists)
+- #############################################
+- # Find out if SZIP was build using dll's
+- #############################################
+- # Save required variable
+- set (CMAKE_REQUIRED_INCLUDES_SAVE ${CMAKE_REQUIRED_INCLUDES})
+- set (CMAKE_REQUIRED_FLAGS_SAVE ${CMAKE_REQUIRED_FLAGS})
+- # Add SZIP_INCLUDE_DIR to CMAKE_REQUIRED_INCLUDES
+- set (CMAKE_REQUIRED_INCLUDES "${CMAKE_REQUIRED_INCLUDES};${SZIP_INCLUDE_DIRS}")
+-
+- # Restore CMAKE_REQUIRED_INCLUDES and CMAKE_REQUIRED_FLAGS variables
+- set (CMAKE_REQUIRED_INCLUDES ${CMAKE_REQUIRED_INCLUDES_SAVE})
+- set (CMAKE_REQUIRED_FLAGS ${CMAKE_REQUIRED_FLAGS_SAVE})
+- #
+- #############################################
+-endif ()
+-
+-if (FIND_SZIP_DEBUG)
+- message (STATUS "SZIP_INCLUDE_DIR: ${SZIP_INCLUDE_DIR}")
+- message (STATUS "SZIP_INCLUDE_DIRS: ${SZIP_INCLUDE_DIRS}")
+- message (STATUS "SZIP_LIBRARY_DEBUG: ${SZIP_LIBRARY_DEBUG}")
+- message (STATUS "SZIP_LIBRARY_RELEASE: ${SZIP_LIBRARY_RELEASE}")
+- message (STATUS "CMAKE_BUILD_TYPE: ${CMAKE_BUILD_TYPE}")
+-endif ()
+diff --git a/hl/c++/src/CMakeLists.txt b/hl/c++/src/CMakeLists.txt
+index 7949b73..a633bdd 100644
+--- a/hl/c++/src/CMakeLists.txt
++++ b/hl/c++/src/CMakeLists.txt
+@@ -102,7 +102,11 @@ install (
+ )
+
+ if (NOT WIN32)
+- set (_PKG_CONFIG_COMPILER ${CMAKE_CXX_COMPILER})
++ if (HDF5_ENABLE_PARALLEL AND MPI_CXX_FOUND)
++ set (_PKG_CONFIG_COMPILER ${MPI_CXX_COMPILER})
++ else ()
++ set (_PKG_CONFIG_COMPILER ${CMAKE_CXX_COMPILER})
++ endif ()
+ configure_file (
+ ${HDF_RESOURCES_DIR}/libh5cc.in
+ ${HDF5_BINARY_DIR}/CMakeFiles/h5hlc++
+diff --git a/hl/src/CMakeLists.txt b/hl/src/CMakeLists.txt
+index d570265..e652ed3 100644
+--- a/hl/src/CMakeLists.txt
++++ b/hl/src/CMakeLists.txt
+@@ -118,7 +118,11 @@ install (
+ )
+
+ if (NOT WIN32)
+- set (_PKG_CONFIG_COMPILER ${CMAKE_C_COMPILER})
++ if (HDF5_ENABLE_PARALLEL AND MPI_C_FOUND)
++ set (_PKG_CONFIG_COMPILER ${MPI_C_COMPILER})
++ else ()
++ set (_PKG_CONFIG_COMPILER ${CMAKE_C_COMPILER})
++ endif ()
+ configure_file (
+ ${HDF_RESOURCES_DIR}/libh5cc.in
+ ${HDF5_BINARY_DIR}/CMakeFiles/h5hlcc
+diff --git a/src/CMakeLists.txt b/src/CMakeLists.txt
+index 4d2f1bc..39cfbca 100644
+--- a/src/CMakeLists.txt
++++ b/src/CMakeLists.txt
+@@ -820,7 +820,11 @@ install (
+ )
+
+ if (NOT WIN32)
+- set (_PKG_CONFIG_COMPILER ${CMAKE_C_COMPILER})
++ if (HDF5_ENABLE_PARALLEL AND MPI_C_FOUND)
++ set (_PKG_CONFIG_COMPILER ${MPI_C_COMPILER})
++ else ()
++ set (_PKG_CONFIG_COMPILER ${CMAKE_C_COMPILER})
++ endif ()
+ configure_file (
+ ${HDF_RESOURCES_DIR}/libh5cc.in
+ ${HDF5_BINARY_DIR}/CMakeFiles/h5cc
+@@ -832,4 +836,18 @@ if (NOT WIN32)
+ PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE
+ COMPONENT libraries
+ )
++ if (HDF5_ENABLE_PARALLEL AND MPI_C_FOUND)
++ #legacy requires a different name
++ configure_file (
++ ${HDF_RESOURCES_DIR}/libh5cc.in
++ ${HDF5_BINARY_DIR}/CMakeFiles/h5pcc
++ @ONLY
++ )
++ install (
++ FILES ${HDF5_BINARY_DIR}/CMakeFiles/h5pcc
++ DESTINATION ${HDF5_INSTALL_BIN_DIR}
++ PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE
++ COMPONENT libraries
++ )
++ endif ()
+ endif ()
diff --git a/var/spack/repos/builtin/packages/hdf5/1.8.22_cmake.patch b/var/spack/repos/builtin/packages/hdf5/1.8.22_cmake.patch
new file mode 100644
index 0000000000..b6016fd5b0
--- /dev/null
+++ b/var/spack/repos/builtin/packages/hdf5/1.8.22_cmake.patch
@@ -0,0 +1,121 @@
+diff --git a/c++/src/CMakeLists.txt b/c++/src/CMakeLists.txt
+index 65d1d43..9e4bf24 100644
+--- a/c++/src/CMakeLists.txt
++++ b/c++/src/CMakeLists.txt
+@@ -211,7 +211,11 @@ install (
+ )
+
+ if (NOT WIN32 AND NOT MINGW)
+- set (_PKG_CONFIG_COMPILER ${CMAKE_CXX_COMPILER})
++ if (HDF5_ENABLE_PARALLEL AND MPI_CXX_FOUND)
++ set (_PKG_CONFIG_COMPILER ${MPI_CXX_COMPILER})
++ else ()
++ set (_PKG_CONFIG_COMPILER ${CMAKE_CXX_COMPILER})
++ endif ()
+ configure_file (
+ ${HDF_RESOURCES_DIR}/libh5cc.in
+ ${HDF5_BINARY_DIR}/CMakeFiles/h5c++
+diff --git a/fortran/src/CMakeLists.txt b/fortran/src/CMakeLists.txt
+index dd03439..f58dde9 100644
+--- a/fortran/src/CMakeLists.txt
++++ b/fortran/src/CMakeLists.txt
+@@ -595,7 +595,11 @@ install (
+ )
+
+ if (NOT WIN32 AND NOT MINGW)
+- set (_PKG_CONFIG_COMPILER ${CMAKE_Fortran_COMPILER})
++ if (HDF5_ENABLE_PARALLEL AND MPI_Fortran_FOUND)
++ set (_PKG_CONFIG_COMPILER ${MPI_Fortran_COMPILER})
++ else ()
++ set (_PKG_CONFIG_COMPILER ${CMAKE_Fortran_COMPILER})
++ endif ()
+ configure_file (
+ ${HDF_RESOURCES_DIR}/libh5cc.in
+ ${HDF5_BINARY_DIR}/CMakeFiles/h5fc
+diff --git a/hl/c++/src/CMakeLists.txt b/hl/c++/src/CMakeLists.txt
+index 1eac9fe..e488656 100644
+--- a/hl/c++/src/CMakeLists.txt
++++ b/hl/c++/src/CMakeLists.txt
+@@ -120,7 +120,11 @@ install (
+ )
+
+ if (NOT WIN32 AND NOT MINGW)
+- set (_PKG_CONFIG_COMPILER ${CMAKE_CXX_COMPILER})
++ if (HDF5_ENABLE_PARALLEL AND MPI_CXX_FOUND)
++ set (_PKG_CONFIG_COMPILER ${MPI_CXX_COMPILER})
++ else ()
++ set (_PKG_CONFIG_COMPILER ${CMAKE_CXX_COMPILER})
++ endif ()
+ configure_file (
+ ${HDF_RESOURCES_DIR}/libh5cc.in
+ ${HDF5_BINARY_DIR}/CMakeFiles/h5hlc++
+diff --git a/hl/fortran/src/CMakeLists.txt b/hl/fortran/src/CMakeLists.txt
+index b309e92..c889736 100644
+--- a/hl/fortran/src/CMakeLists.txt
++++ b/hl/fortran/src/CMakeLists.txt
+@@ -260,7 +260,11 @@ install (
+ )
+
+ if (NOT WIN32 AND NOT MINGW)
+- set (_PKG_CONFIG_COMPILER ${CMAKE_Fortran_COMPILER})
++ if (HDF5_ENABLE_PARALLEL AND MPI_Fortran_FOUND)
++ set (_PKG_CONFIG_COMPILER ${MPI_Fortran_COMPILER})
++ else ()
++ set (_PKG_CONFIG_COMPILER ${CMAKE_Fortran_COMPILER})
++ endif ()
+ configure_file (
+ ${HDF_RESOURCES_DIR}/libh5cc.in
+ ${HDF5_BINARY_DIR}/CMakeFiles/h5hlfc
+diff --git a/hl/src/CMakeLists.txt b/hl/src/CMakeLists.txt
+index cc5aca5..d07f354 100644
+--- a/hl/src/CMakeLists.txt
++++ b/hl/src/CMakeLists.txt
+@@ -148,7 +148,11 @@ install (
+ )
+
+ if (NOT WIN32 AND NOT MINGW)
+- set (_PKG_CONFIG_COMPILER ${CMAKE_C_COMPILER})
++ if (HDF5_ENABLE_PARALLEL AND MPI_C_FOUND)
++ set (_PKG_CONFIG_COMPILER ${MPI_C_COMPILER})
++ else ()
++ set (_PKG_CONFIG_COMPILER ${CMAKE_C_COMPILER})
++ endif ()
+ configure_file (
+ ${HDF_RESOURCES_DIR}/libh5cc.in
+ ${HDF5_BINARY_DIR}/CMakeFiles/h5hlcc
+diff --git a/src/CMakeLists.txt b/src/CMakeLists.txt
+index 217c55d..521d3fd 100644
+--- a/src/CMakeLists.txt
++++ b/src/CMakeLists.txt
+@@ -1129,7 +1129,11 @@ install (
+ )
+
+ if (NOT WIN32)
+- set (_PKG_CONFIG_COMPILER ${CMAKE_C_COMPILER})
++ if (HDF5_ENABLE_PARALLEL AND MPI_C_FOUND)
++ set (_PKG_CONFIG_COMPILER ${MPI_C_COMPILER})
++ else ()
++ set (_PKG_CONFIG_COMPILER ${CMAKE_C_COMPILER})
++ endif ()
+ configure_file (
+ ${HDF_RESOURCES_DIR}/libh5cc.in
+ ${HDF5_BINARY_DIR}/CMakeFiles/h5cc
+@@ -1141,4 +1145,18 @@ if (NOT WIN32)
+ PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE
+ COMPONENT libraries
+ )
++ if (HDF5_ENABLE_PARALLEL AND MPI_C_FOUND)
++ #legacy requires a different name
++ configure_file (
++ ${HDF_RESOURCES_DIR}/libh5cc.in
++ ${HDF5_BINARY_DIR}/CMakeFiles/h5pcc
++ @ONLY
++ )
++ install (
++ FILES ${HDF5_BINARY_DIR}/CMakeFiles/h5pcc
++ DESTINATION ${HDF5_INSTALL_BIN_DIR}
++ PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE
++ COMPONENT libraries
++ )
++ endif ()
+ endif ()
diff --git a/var/spack/repos/builtin/packages/hdf5/package.py b/var/spack/repos/builtin/packages/hdf5/package.py
index 0aa7e5b730..99cb1e4975 100644
--- a/var/spack/repos/builtin/packages/hdf5/package.py
+++ b/var/spack/repos/builtin/packages/hdf5/package.py
@@ -6,10 +6,8 @@
import shutil
import sys
-from spack.util.environment import is_system_path
-
-class Hdf5(AutotoolsPackage):
+class Hdf5(CMakePackage):
"""HDF5 is a data model, library, and file format for storing and managing
data. It supports an unlimited variety of datatypes, and is designed for
flexible and efficient I/O and for high volume and complex data.
@@ -19,20 +17,18 @@ class Hdf5(AutotoolsPackage):
url = "https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.7/src/hdf5-1.10.7.tar.gz"
list_url = "https://support.hdfgroup.org/ftp/HDF5/releases"
list_depth = 3
- git = "https://bitbucket.hdfgroup.org/scm/hdffv/hdf5.git"
- maintainers = ['lrknox']
+ git = "https://github.com/HDFGroup/hdf5.git"
+ maintainers = ['lrknox', 'brtnfld', 'byrnHDF', 'ChristopherHogan', 'epourmal',
+ 'gheber', 'hyoklee', 'lkurz', 'soumagne']
test_requires_compiler = True
- # We rely on the *.la files to be removed and, therefore, do not try to make
- # sure that they are correct. The following is a precaution against someone
- # blindly changing the value to True, either here or in the baseclass.
- install_libtool_archives = False
-
version('develop', branch='develop')
+ version('develop-1.12', branch='hdf5_1_12')
+ version('develop-1.10', branch='hdf5_1_10')
+ version('develop-1.8', branch='hdf5_1_8')
version('1.12.0', sha256='a62dcb276658cb78e6795dd29bf926ed7a9bc4edf6e77025cd2c689a8f97c17a')
-
# HDF5 1.12 broke API compatibility, so we currently prefer the latest
# 1.10 release. packages that want later versions of HDF5 should specify,
# e.g., depends_on("hdf5@1.12:") to get 1.12 or higher.
@@ -58,8 +54,6 @@ class Hdf5(AutotoolsPackage):
version('1.8.12', sha256='b5cccea850096962b5fd9e96f22c4f47d2379224bb41130d9bc038bb6c37dfcb')
version('1.8.10', sha256='4813b79c5fb8701a625b9924b8203bc7154a77f9b826ad4e034144b4056a160a')
- variant('debug', default=False,
- description='Builds a debug version of the library')
variant('shared', default=True,
description='Builds a shared version of the library')
@@ -69,32 +63,39 @@ class Hdf5(AutotoolsPackage):
variant('java', default=False, description='Enable Java support')
variant('threadsafe', default=False,
description='Enable thread-safe capabilities')
-
+ variant('tools', default=True, description='Enable building tools')
variant('mpi', default=True, description='Enable MPI support')
variant('szip', default=False, description='Enable szip support')
variant('pic', default=True,
description='Produce position-independent code (for shared libs)')
- # Build HDF5 with API compaitibility.
- variant('api', default='none', description='choose api compatibility', values=('none', 'v114', 'v112', 'v110', 'v18', 'v16'), multi=False)
+ # Build HDF5 with API compatibility.
+ variant('api', default='default', description='Choose api compatibility for earlier version', values=('default', 'v114', 'v112', 'v110', 'v18', 'v16'), multi=False)
conflicts('api=v114', when='@1.6:1.12.99', msg='v114 is not compatible with this release')
conflicts('api=v112', when='@1.6:1.10.99', msg='v112 is not compatible with this release')
conflicts('api=v110', when='@1.6:1.8.99', msg='v110 is not compatible with this release')
conflicts('api=v18', when='@1.6:1.6.99', msg='v18 is not compatible with this release')
- depends_on('autoconf', type='build', when='@develop')
- depends_on('automake', type='build', when='@develop')
- depends_on('libtool', type='build', when='@develop')
- depends_on('m4', type='build', when='@develop')
+ depends_on('cmake@3.12:')
depends_on('mpi', when='+mpi')
- depends_on('java', when='+java')
+ depends_on('java', type=('build', 'run'), when='+java')
# numactl does not currently build on darwin
if sys.platform != 'darwin':
depends_on('numactl', when='+mpi+fortran')
depends_on('szip', when='+szip')
depends_on('zlib@1.1.2:')
+ # The Java wrappers and associated libhdf5_java library
+ # were first available in 1.10
+ conflicts('+java', when='@:1.9')
+ # The Java wrappers cannot be built without shared libs.
+ conflicts('+java', when='~shared')
+
+ # Earlier versions of HDF5 will not correctly find szip without the patches
+ # in the <version>_cmake.patch files
+ conflicts('+szip', when='@:1.8.19,1.9.0:1.10.5')
+
# There are several officially unsupported combinations of the features:
# 1. Thread safety is not guaranteed via high-level C-API but in some cases
# it works.
@@ -138,7 +139,7 @@ class Hdf5(AutotoolsPackage):
# Disable MPI C++ interface when C++ is disabled, otherwise downstream
# libraries fail to link; see https://github.com/spack/spack/issues/12586
- patch('h5public-skip-mpicxx.patch', when='@:1.8.21,1.10.0:1.10.5+mpi~cxx',
+ patch('h5public-skip-mpicxx.patch', when='@1.8.10:1.8.21,1.10.0:1.10.5+mpi~cxx',
sha256='b61e2f058964ad85be6ee5ecea10080bf79e73f83ff88d1fa4b602d00209da9c')
# Fixes BOZ literal constant error when compiled with GCC 10.
@@ -151,6 +152,15 @@ class Hdf5(AutotoolsPackage):
# based on Libtool 2.4.6.
patch('nag.mpi.libtool.patch', when='@1.8.18:%nag+fortran+mpi+shared')
+ patch('1.12.0_cmake.patch', when='@1.12.0',
+ sha256='e5b3bc2eecb693e88ce084dfceb35fdce68a0749945173c4bff7cf29fa81de4c')
+ patch('1.10.7_cmake.patch', when='@1.10.6:1.10.7',
+ sha256='dd9491bbe833b13929cb14b52137f7f44a539b4bfc89fc31e6e50a36e3e1b171')
+ patch('1.8.22_cmake.patch', when='@1.8.22',
+ sha256='2ca847df0f4aa24e8fe9aa7f156d48aae505a0226ca8df5d3e9b21d8087035bd')
+ patch('1.8.21_cmake.patch', when='@1.8.21',
+ sha256='b6a39255b2cc4fdf5767969a3f0cf83fc278b1750221b55ad48352a6ee3e4071')
+
# The argument 'buf_size' of the C function 'h5fget_file_image_c' is
# declared as intent(in) though it is modified by the invocation. As a
# result, aggressive compilers such as Fujitsu's may do a wrong
@@ -190,11 +200,6 @@ class Hdf5(AutotoolsPackage):
return (None, None, flags)
- @when('@develop')
- def autoreconf(self, spec, prefix):
- autogen = Executable('./autogen.sh')
- autogen()
-
@property
def libs(self):
"""HDF5 can be queried for the following parameters:
@@ -202,6 +207,7 @@ class Hdf5(AutotoolsPackage):
- "hl": high-level interface
- "cxx": C++ APIs
- "fortran": Fortran APIs
+ - "java": Java APIs
:return: list of matching libraries
"""
@@ -213,11 +219,12 @@ class Hdf5(AutotoolsPackage):
# to the libraries needed
query2libraries = {
tuple(): ['libhdf5'],
- ('cxx', 'fortran', 'hl'): [
+ ('cxx', 'fortran', 'hl', 'java'): [
'libhdf5hl_fortran',
'libhdf5_hl_cpp',
'libhdf5_hl',
'libhdf5_fortran',
+ 'libhdf5_java',
'libhdf5',
],
('cxx', 'hl'): [
@@ -247,6 +254,10 @@ class Hdf5(AutotoolsPackage):
('fortran',): [
'libhdf5_fortran',
'libhdf5',
+ ],
+ ('java',): [
+ 'libhdf5_java',
+ 'libhdf5',
]
}
@@ -258,104 +269,82 @@ class Hdf5(AutotoolsPackage):
libraries, root=self.prefix, shared=shared, recursive=True
)
- @run_before('configure')
+ @run_before('cmake')
def fortran_check(self):
if '+fortran' in self.spec and not self.compiler.fc:
msg = 'cannot build a Fortran variant without a Fortran compiler'
raise RuntimeError(msg)
- def with_or_without_szip(self, activated):
- return '--{0}-szlib'.format('with' if activated else 'without')
+ def cmake_args(self):
+ spec = self.spec
- def configure_args(self):
# Always enable this option. This does not actually enable any
# features: it only *allows* the user to specify certain
# combinations of other arguments. Enabling it just skips a
# sanity check in configure, so this doesn't merit a variant.
- extra_args = ['--enable-unsupported',
- '--enable-symbols=yes']
-
- # Do not specify the prefix of zlib if it is in a system directory
- # (see https://github.com/spack/spack/pull/21900).
- zlib_prefix = self.spec['zlib'].prefix
- extra_args.append('--with-zlib={0}'.format(
- 'yes' if is_system_path(zlib_prefix) else zlib_prefix))
-
- extra_args += self.enable_or_disable('threadsafe')
- extra_args += self.enable_or_disable('cxx')
- extra_args += self.enable_or_disable('hl')
- extra_args += self.enable_or_disable('fortran')
- extra_args += self.enable_or_disable('java')
- extra_args += self.with_or_without('szip')
-
- api = self.spec.variants['api'].value
- if api != 'none':
- extra_args.append('--with-default-api-version=' + api)
-
- if self.spec.satisfies('@1.10:'):
- if '+debug' in self.spec:
- extra_args.append('--enable-build-mode=debug')
- else:
- extra_args.append('--enable-build-mode=production')
- else:
- if '+debug' in self.spec:
- extra_args.append('--enable-debug=all')
- else:
- extra_args.append('--enable-production')
-
- # '--enable-fortran2003' no longer exists as of version 1.10.0
- if '+fortran' in self.spec:
- extra_args.append('--enable-fortran2003')
- else:
- extra_args.append('--disable-fortran2003')
+ args = [
+ self.define('ALLOW_UNSUPPORTED', True),
+ self.define('HDF5_ENABLE_Z_LIB_SUPPORT', True),
+ self.define_from_variant('HDF5_ENABLE_SZIP_SUPPORT', 'szip'),
+ self.define_from_variant('BUILD_SHARED_LIBS', 'shared'),
+ self.define_from_variant('HDF5_ENABLE_PARALLEL', 'mpi'),
+ self.define_from_variant('HDF5_ENABLE_THREADSAFE', 'threadsafe'),
+ self.define_from_variant('HDF5_BUILD_HL_LIB', 'hl'),
+ self.define_from_variant('HDF5_BUILD_CPP_LIB', 'cxx'),
+ self.define_from_variant('HDF5_BUILD_FORTRAN', 'fortran'),
+ self.define_from_variant('HDF5_BUILD_JAVA', 'java'),
+ self.define_from_variant('HDF5_BUILD_TOOLS', 'tools')
+ ]
- if '+shared' in self.spec:
- extra_args.append('--enable-shared')
- else:
- extra_args.append('--disable-shared')
- extra_args.append('--enable-static-exec')
+ if '+szip' in spec:
+ args.append(self.define('HDF5_ENABLE_SZIP_ENCODING', True))
+
+ api = spec.variants['api'].value
+ if api != 'default':
+ args.append(self.define('DEFAULT_API_VERSION', api))
+
+ # The variable CMAKE_POSITION_INDEPENDENT_CODE is set to True by default in
+ # HDF5 Cmake code; this should insure that it is off if '~pic' in spec. The
+ # flags that were previously set for '+pic' in the Autotools version are kept
+ # in case CMake doesn't set them as expected. Both the 'pic' variant and the
+ # CMAKE_POSITION_INDEPENDENT_CODE variable are True by default, but '~pic'
+ # should disable them both.
+ args.append(self.define_from_variant('CMAKE_POSITION_INDEPENDENT_CODE', 'pic'))
+ if '+pic' in spec:
+ # use global spack compiler flags
+ _flags = self.compiler.cc_pic_flag
+ _flags += " " + ' '.join(spec.compiler_flags['cflags'])
+ args.append('CFLAGS={0}'.format(_flags))
+
+ if '+cxx' in spec:
+ _flags = self.compiler.cxx_pic_flag
+ _flags += " " + ' '.join(spec.compiler_flags['cxxflags'])
+ args.append('CXXFLAGS={0}'.format(_flags))
+
+ if '+fortran' in spec:
+ _flags = self.compiler.fc_pic_flag
+ _flags += " " + ' '.join(spec.compiler_flags['fflags'])
+ args.append('FCFLAGS={0}'.format(_flags))
# Fujitsu Compiler does not add Fortran runtime in rpath.
- if '+fortran %fj' in self.spec:
- extra_args.append('LDFLAGS=-lfj90i -lfj90f -lfjsrcinfo -lelf')
+ if '+fortran %fj' in spec:
+ args.append('LDFLAGS=-lfj90i -lfj90f -lfjsrcinfo -lelf')
- if '+mpi' in self.spec:
+ if '+mpi' in spec:
# The HDF5 configure script warns if cxx and mpi are enabled
# together. There doesn't seem to be a real reason for this, except
# that parts of the MPI interface are not accessible via the C++
# interface. Since they are still accessible via the C interface,
# this is not actually a problem.
- extra_args += ['--enable-parallel',
- 'CC=%s' % self.spec['mpi'].mpicc]
+ args.append('CC=%s' % self.spec['mpi'].mpicc)
if '+cxx' in self.spec:
- extra_args.append('CXX=%s' % self.spec['mpi'].mpicxx)
+ args.append('CXX=%s' % self.spec['mpi'].mpicxx)
if '+fortran' in self.spec:
- extra_args.append('FC=%s' % self.spec['mpi'].mpifc)
-
- return extra_args
-
- @run_after('configure')
- def patch_postdeps(self):
- if '@:1.8.14' in self.spec:
- # On Ubuntu14, HDF5 1.8.12 (and maybe other versions)
- # mysteriously end up with "-l -l" in the postdeps in the
- # libtool script. Patch this by removing the spurious -l's.
- filter_file(
- r'postdeps="([^"]*)"',
- lambda m: 'postdeps="%s"' % ' '.join(
- arg for arg in m.group(1).split(' ') if arg != '-l'),
- 'libtool')
-
- @run_after('configure')
- def patch_libtool(self):
- """AOCC support for HDF5"""
- if '%aocc' in self.spec:
- filter_file(
- r'\$wl-soname \$wl\$soname',
- r'-fuse-ld=ld -Wl,-soname,\$soname',
- 'libtool', string=True)
+ args.append('FC=%s' % self.spec['mpi'].mpifc)
+
+ return args
@run_after('install')
@on_package_attributes(run_tests=True)