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| -rw-r--r-- | var/spack/repos/builtin/packages/butter/package.py | 46 |
1 files changed, 46 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/butter/package.py b/var/spack/repos/builtin/packages/butter/package.py new file mode 100644 index 0000000000..4bd1607097 --- /dev/null +++ b/var/spack/repos/builtin/packages/butter/package.py @@ -0,0 +1,46 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class Butter(Package): + """butter: Bowtie UTilizing iTerative placEment of Repetitive small rnas. + A wrapper for bowtie to produce small RNA-seq alignments where + multimapped small RNAs tend to be placed near regions of confidently + high density.""" + + homepage = "https://github.com/MikeAxtell/butter" + url = "https://github.com/MikeAxtell/butter/archive/v0.3.3.tar.gz" + + version('0.3.3', '806ff3cb7afc1d8b75126404056c629d') + + depends_on('perl', type=('build', 'run')) + depends_on('samtools') + depends_on('bowtie') + + def install(self, spec, prefix): + mkdirp(prefix.bin) + install('butter', prefix.bin) + install('bam2wig', prefix.bin) |