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| -rw-r--r-- | var/spack/repos/builtin/packages/py-gffutils/package.py | 30 |
1 files changed, 30 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/py-gffutils/package.py b/var/spack/repos/builtin/packages/py-gffutils/package.py new file mode 100644 index 0000000000..8854e47df6 --- /dev/null +++ b/var/spack/repos/builtin/packages/py-gffutils/package.py @@ -0,0 +1,30 @@ +# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * + + +class PyGffutils(PythonPackage): + """GFF and GTF file manipulation and interconversion + + gffutils is a Python package for working with and manipulating the GFF and + GTF format files typically used for genomic annotations. Files are loaded + into a sqlite3 database, allowing much more complex manipulation of + hierarchical features (e.g., genes, transcripts, and exons) than is + possible with plain-text methods alone.""" + + homepage = "https://github.com/daler/gffutils" + pypi = "gffutils/gffutils-0.10.1.tar.gz" + + maintainers = ['dorton21'] + + version('0.10.1', sha256='a8fc39006d7aa353147238160640e2210b168f7849cb99896be3fc9441e351cb') + + depends_on('py-setuptools', type='build') + depends_on('py-pyfaidx@0.5.5.2:', type=('build', 'run')) + depends_on('py-six@1.12.0:', type=('build', 'run')) + depends_on('py-argh@0.26.2:', type=('build', 'run')) + depends_on('py-argcomplete@1.9.4:', type=('build', 'run')) + depends_on('py-simplejson', type=('build', 'run')) |