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-rw-r--r--var/spack/repos/builtin/packages/r-kegggraph/package.py43
1 files changed, 43 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/r-kegggraph/package.py b/var/spack/repos/builtin/packages/r-kegggraph/package.py
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+##############################################################################
+# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/spack/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class RKegggraph(RPackage):
+ """KEGGGraph is an interface between KEGG pathway and graph object as
+ well as a collection of tools to analyze, dissect and visualize these
+ graphs. It parses the regularly updated KGML (KEGG XML) files into graph
+ models maintaining all essential pathway attributes. The package offers
+ functionalities including parsing, graph operation, visualization and
+ etc."""
+
+ homepage = "https://www.bioconductor.org/packages/KEGGgraph/"
+ url = "https://git.bioconductor.org/packages/KEGGgraph"
+
+ version('1.38.1', git='https://git.bioconductor.org/packages/KEGGgraph', commit='dd31665beb36d5aad8ed09ed56c603633b6b2292')
+
+ depends_on('r-graph', type=('build', 'run'))
+ depends_on('r-xml', type=('build', 'run'))
+ depends_on('r@3.4.0:3.4.9', when='@1.38.1')