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3 files changed, 73 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/py-lfpykit/package.py b/var/spack/repos/builtin/packages/py-lfpykit/package.py new file mode 100644 index 0000000000..f7397903c8 --- /dev/null +++ b/var/spack/repos/builtin/packages/py-lfpykit/package.py @@ -0,0 +1,21 @@ +# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack.package import * + + +class PyLfpykit(PythonPackage): + """This Python module contain freestanding implementations of electrostatic forward models + incorporated in LFPy""" + + homepage = "https://github.com/LFPy/LFPykit" + pypi = "lfpykit/LFPykit-0.5.tar.gz" + + version("0.5", sha256="9a7ae80ad905bb8dd0eeab8517b43c3d5b4fff2b8766c9d5a36320a7a67bd545") + + depends_on("py-setuptools", type="build") + depends_on("py-numpy@1.15.2:", type=("build", "run")) + depends_on("py-scipy", type=("build", "run")) + depends_on("py-meautility", type=("build", "run")) diff --git a/var/spack/repos/builtin/packages/py-meautility/package.py b/var/spack/repos/builtin/packages/py-meautility/package.py new file mode 100644 index 0000000000..effc526f9d --- /dev/null +++ b/var/spack/repos/builtin/packages/py-meautility/package.py @@ -0,0 +1,21 @@ +# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack.package import * + + +class PyMeautility(PythonPackage): + """Python package for multi-electrode array (MEA) handling and stimulation.""" + + homepage = "https://github.com/alejoe91/MEAutility" + pypi = "meautility/MEAutility-1.5.1.tar.gz" + + version("1.5.1", sha256="de12cc9c1772d3321e941af78e6bfb36cdcb5702a7b1272a852cc95f413bbfcb") + + depends_on("py-setuptools", type="build") + + depends_on("py-numpy", type=("build", "run")) + depends_on("py-pyyaml", type=("build", "run")) + depends_on("py-matplotlib", type=("build", "run")) diff --git a/var/spack/repos/builtin/packages/py-netpyne/package.py b/var/spack/repos/builtin/packages/py-netpyne/package.py new file mode 100644 index 0000000000..3604320e7f --- /dev/null +++ b/var/spack/repos/builtin/packages/py-netpyne/package.py @@ -0,0 +1,31 @@ +# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack.package import * + + +class PyNetpyne(PythonPackage): + """Netpyne: A python package to facilitate the development, + parallel simulation, optimization and analysis of multiscale + biological neuronal networks in NEURON.""" + + homepage = "http://www.netpyne.org/" + url = "https://github.com/suny-downstate-medical-center/netpyne/archive/refs/tags/v1.0.3.1.tar.gz" + git = "https://github.com/suny-downstate-medical-center/netpyne.git" + + version("master", branch="master") + version("1.0.3.1", sha256="4f8492d58ff1dd7ec5ba6ed1f58f94548b8c1e4e9fd50b8a6d2e9f8eb400736d") + + depends_on("py-setuptools", type="build") + + depends_on("py-numpy", type=("build", "run")) + depends_on("py-scipy", type=("build", "run")) + depends_on("py-matplotlib@:3.5.1", type=("build", "run")) + depends_on("py-matplotlib-scalebar", type=("build", "run")) + depends_on("py-future", type=("build", "run")) + depends_on("py-pandas", type=("build", "run")) + depends_on("py-bokeh", type=("build", "run")) + depends_on("py-schema", type=("build", "run")) + depends_on("py-lfpykit", type=("build", "run")) |