diff options
| -rw-r--r-- | var/spack/repos/builtin/packages/primer3/package.py | 18 |
1 files changed, 15 insertions, 3 deletions
diff --git a/var/spack/repos/builtin/packages/primer3/package.py b/var/spack/repos/builtin/packages/primer3/package.py index f54d1d6828..b4f2ad849b 100644 --- a/var/spack/repos/builtin/packages/primer3/package.py +++ b/var/spack/repos/builtin/packages/primer3/package.py @@ -12,13 +12,25 @@ class Primer3(MakefilePackage): ubiquitous tool in genetics and molecular biology. Primer3 can also design hybridization probes and sequencing primers.""" - homepage = "http://primer3.sourceforge.net/" - url = "https://sourceforge.net/projects/primer3/files/primer3/2.3.7/primer3-2.3.7.tar.gz/download" + homepage = "https://primer3.org/" + url = "https://github.com/primer3-org/primer3/archive/v2.3.7.tar.gz" - version('2.3.7', sha256='9e37a301d2ca9e5034c9a9d4afcb3e90041f6cc44c658b63598d0ccfcb176e5e') + version('2.5.0', sha256='7581e2fa3228ef0ee1ffa427b2aa0a18fc635d561208327471daf59d1b804da0') + version('2.3.7', sha256='f7ac3e64dc89b7c80882bf0f52c2c0a58572f5fdafd178680d4a7ae91b6c465b') build_directory = 'src' + # Prior to May 15, 2018, the code contained invalid pointer/int + # comparisons, leading to compilers that default to strict mode + # failing to compile thal.c. + # This prevents building 2.3.7 w/ gcc@8.4.0. Details here: + # https://github.com/primer3-org/primer3/issues/2 + # https://github.com/primer3-org/primer3/issues/3 + def patch(self): + if self.spec.version == Version('2.3.7'): + filter_file(r'^(CC_OPTS.*)', r'\1 -fpermissive', + join_path('src', 'Makefile')) + def install(self, spec, prefix): with working_dir(self.build_directory): mkdirp(prefix.bin) |