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| -rw-r--r-- | var/spack/repos/builtin/packages/r-seurat/package.py | 73 |
1 files changed, 73 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/r-seurat/package.py b/var/spack/repos/builtin/packages/r-seurat/package.py new file mode 100644 index 0000000000..5930430b6d --- /dev/null +++ b/var/spack/repos/builtin/packages/r-seurat/package.py @@ -0,0 +1,73 @@ +############################################################################## +# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/spack/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class RSeurat(RPackage): + """Seurat is an R package designed for QC, analysis, and exploration of + single cell RNA-seq data.""" + + homepage = "http://satijalab.org/seurat/" + url = "https://cran.r-project.org/src/contrib/Seurat_2.1.0.tar.gz" + list_url = "https://cran.r-project.org/src/contrib/Archive/Seurat" + + version('2.1.0', '46427837bb739883f9b7addd08fccee5') + version('2.0.1', 'a77794891e93b9fa1ef41735fe8424ea') + + depends_on('r@3.4.0:3.4.9') + depends_on('r-ggplot2', type=('build', 'run')) + depends_on('r-gplots', type=('build', 'run')) + depends_on('r-reshape2', type=('build', 'run')) + depends_on('r-ape', type=('build', 'run')) + depends_on('r-tidyr', type=('build', 'run')) + depends_on('r-caret', type=('build', 'run')) + depends_on('r-gdata', type=('build', 'run')) + depends_on('r-glue', type=('build', 'run')) + depends_on('r-pkgconfig', type=('build', 'run')) + depends_on('r-plogr', type=('build', 'run')) + depends_on('r-gridextra', type=('build', 'run')) + depends_on('r-cowplot', type=('build', 'run')) + depends_on('r-rocr', type=('build', 'run')) + depends_on('r-hmisc', type=('build', 'run')) + depends_on('r-nmf', type=('build', 'run')) + depends_on('r-irlba', type=('build', 'run')) + depends_on('r-igraph', type=('build', 'run')) + depends_on('r-fpc', type=('build', 'run')) + depends_on('r-rcppprogress', type=('build', 'run')) + depends_on('r-lars', type=('build', 'run')) + depends_on('r-dtw', type=('build', 'run')) + depends_on('r-mixtools', type=('build', 'run')) + depends_on('r-ica', type=('build', 'run')) + depends_on('r-diffusionmap', type=('build', 'run')) + depends_on('r-tsne', type=('build', 'run')) + depends_on('r-rtsne', type=('build', 'run')) + depends_on('r-ranger', type=('build', 'run')) + depends_on('r-pbapply', type=('build', 'run')) + depends_on('r-ggjoy', type=('build', 'run')) + depends_on('r-plotly', type=('build', 'run')) + depends_on('r-sdmtools', type=('build', 'run')) + depends_on('r-tclust', type=('build', 'run')) + depends_on('r-fnn', type=('build', 'run')) + depends_on('r-vgam', type=('build', 'run')) |