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| -rw-r--r-- | var/spack/repos/builtin/packages/fasttree/package.py | 50 |
1 files changed, 50 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/fasttree/package.py b/var/spack/repos/builtin/packages/fasttree/package.py new file mode 100644 index 0000000000..d1b0163004 --- /dev/null +++ b/var/spack/repos/builtin/packages/fasttree/package.py @@ -0,0 +1,50 @@ +############################################################################## +# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/spack/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class Fasttree(Package): + """FastTree infers approximately-maximum-likelihood phylogenetic + trees from alignments of nucleotide or protein sequences. + FastTree can handle alignments with up to a million of sequences + in a reasonable amount of time and memory.""" + + homepage = "http://www.microbesonline.org/fasttree" + url = "http://www.microbesonline.org/fasttree/FastTree-2.1.10.c" + + version('2.1.10', '1c2c6425a638ec0c61ef064cda687987', expand=False, url='http://www.microbesonline.org/fasttree/FastTree-2.1.10.c') + + phases = ['build', 'install'] + + def build(self, spec, prefix): + cc = Executable(spack_cc) + cc('-O3', self.compiler.openmp_flag, + '-DOPENMP', '-finline-functions', '-funroll-loops', '-Wall', + '-oFastTreeMP', 'FastTree-' + format(spec.version.dotted) + '.c', + '-lm') + + def install(self, spec, prefix): + mkdir(prefix.bin) + install('FastTreeMP', prefix.bin) |