diff options
| -rw-r--r-- | var/spack/repos/builtin/packages/signalp/package.py | 61 |
1 files changed, 61 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/signalp/package.py b/var/spack/repos/builtin/packages/signalp/package.py new file mode 100644 index 0000000000..78caa33452 --- /dev/null +++ b/var/spack/repos/builtin/packages/signalp/package.py @@ -0,0 +1,61 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * +import os + + +class Signalp(Package): + """SignalP predicts the presence and location of signal peptide cleavage + sites in amino acid sequences from different organisms: Gram-positive + bacteria, Gram-negative bacteria, and eukaryotes. + Note: A manual download is required for SignalP. + Spack will search your current directory for the download file. + Alternatively, add this file to a mirror so that Spack can find it. + For instructions on how to set up a mirror, see + http://spack.readthedocs.io/en/latest/mirrors.html""" + + homepage = "http://www.cbs.dtu.dk/services/SignalP/" + url = "file://{0}/signalp-4.1f.Linux.tar.gz".format(os.getcwd()) + + version('4.1f', 'a9aeb66259202649c959846f3f4d9744') + + depends_on('perl', type=('build', 'run')) + depends_on('gnuplot') + + def patch(self): + edit = FileFilter('signalp') + edit.filter("ENV{SIGNALP} = .*", + "ENV{SIGNALP} = '%s'" % self.prefix) + + def install(self, spec, prefix): + mkdirp(prefix.share.man) + install('signalp', prefix) + install('signalp.1', prefix.share.man) + install_tree('bin', prefix.bin) + install_tree('lib', prefix.lib) + install_tree('syn', prefix.syn) + + def setup_environment(self, spack_env, run_env): + run_env.prepend_path('PATH', prefix) |