diff options
| -rw-r--r-- | var/spack/repos/builtin/packages/py-amici/package.py | 45 | ||||
| -rw-r--r-- | var/spack/repos/builtin/packages/py-python-libsbml/package.py | 23 |
2 files changed, 68 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/py-amici/package.py b/var/spack/repos/builtin/packages/py-amici/package.py new file mode 100644 index 0000000000..ffa03c928f --- /dev/null +++ b/var/spack/repos/builtin/packages/py-amici/package.py @@ -0,0 +1,45 @@ +# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack.package import * + + +class PyAmici(PythonPackage): + """Advanced Multilanguage Interface for CVODES and IDAS""" + + homepage = "https://github.com/AMICI-dev/AMICI" + pypi = "amici/amici-0.11.28.tar.gz" + + version("0.16.0", sha256="1a2d6633ec34241d8d8b496d18d4318482cffe125e9ddf3ca6cac5d36d235f38") + version("0.11.28", sha256="a8ddda70d8ebdc40600b4ad2ea02eb26e765ca0e594b957f61866b8c84255d5b") + + variant("boost", default=True, description="Enable boost support") + variant("hdf5", default=True, description="Enable HDF5 support") + + depends_on("py-setuptools@48:", type=("build", "run")) + + depends_on("blas", type=("build", "run")) + depends_on("boost", when="+boost", type=("build", "run")) + depends_on("hdf5", when="+hdf5", type=("build", "run")) + depends_on("swig@3.0:", type=("build", "run")) + + depends_on("python@3.8:", type=("build", "run")) + depends_on("py-sympy@1.9:", type=("build", "run")) + depends_on("py-numpy@1.17.5:", when="^python@3.8", type=("build", "run")) + depends_on("py-numpy@1.19.3:", when="^python@3.9", type=("build", "run")) + depends_on("py-numpy@1.21.4:", when="^python@3.10:", type=("build", "run")) + depends_on("py-python-libsbml", type=("build", "run")) + depends_on("py-h5py", type=("build", "run")) + depends_on("py-pandas", type=("build", "run")) + depends_on("py-pkgconfig", type=("build", "run")) + depends_on("py-wurlitzer", type=("build", "run")) + depends_on("py-toposort", type=("build", "run")) + depends_on("py-mpmath", when="@0.16.0:", type=("build", "run")) + + def setup_run_environment(self, env): + env.set("BLAS_LIBS", " ".join(self.spec["blas"].libs)) + + def setup_build_environment(self, env): + env.set("BLAS_LIBS", " ".join(self.spec["blas"].libs)) diff --git a/var/spack/repos/builtin/packages/py-python-libsbml/package.py b/var/spack/repos/builtin/packages/py-python-libsbml/package.py new file mode 100644 index 0000000000..ac47367362 --- /dev/null +++ b/var/spack/repos/builtin/packages/py-python-libsbml/package.py @@ -0,0 +1,23 @@ +# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack.package import * + + +class PyPythonLibsbml(PythonPackage): + """LibSBML is a library for reading, writing and manipulating the Systems Biology + Markup Language (SBML).""" + + homepage = "https://sbml.org/" + git = "https://github.com/sbmlteam/python-libsbml.git" + pypi = "python-libsbml/python-libsbml-5.19.7.tar.gz" + + version("5.19.7", sha256="447b1fde7aceccd11a93dc9f589ffd9319ba854d7b7583f911259a8b0127ab7b") + version("5.19.5", tag="v5.19.5", submodules=True) + + depends_on("py-setuptools", type="build") + + depends_on("swig", type="build") + depends_on("cmake", type=("build", "run")) |