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| -rw-r--r-- | var/spack/repos/builtin/packages/r-dirichletmultinomial/package.py | 44 |
1 files changed, 44 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/r-dirichletmultinomial/package.py b/var/spack/repos/builtin/packages/r-dirichletmultinomial/package.py new file mode 100644 index 0000000000..ef23ae0abd --- /dev/null +++ b/var/spack/repos/builtin/packages/r-dirichletmultinomial/package.py @@ -0,0 +1,44 @@ +############################################################################## +# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/spack/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class RDirichletmultinomial(RPackage): + """Dirichlet-multinomial mixture models can be used to describe + variability in microbial metagenomic data. + + This package is an interface to code originally made available by + Holmes, Harris, and Quince, 2012, PLoS ONE 7(2): 1-15, as discussed + further in the man page for this package, ?DirichletMultinomial.""" + + homepage = "https://bioconductor.org/packages/DirichletMultinomial/" + url = "https://git.bioconductor.org/packages/DirichletMultinomial" + + version('1.20.0', git='https://git.bioconductor.org/packages/DirichletMultinomial', commit='251529f301da1482551142240aeb6baf8dab2272') + + depends_on('r-s4vectors', type=('build', 'run')) + depends_on('r-iranges', type=('build', 'run')) + depends_on('gsl') + depends_on('r@3.4.0:') |